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13 events found

Scientific topics: Biomedical science  or Data visualisation  or Sequencing  or Computer science 

and

City: Bogota  or Canberra  or Sydney  or Brisbane 

  • Software Carpentry Introduction to Programming with R and Use of Unix Shell and Git, plus Data Carpentry Processing and Visualization of Genomic Datasets

    11 - 13 April 2016

    Canberra, Australia

    Software Carpentry Introduction to Programming with R and Use of Unix Shell and Git, plus Data Carpentry Processing and Visualization of Genomic Datasets https://tess.elixir-europe.org/events/software-carpentry-introduction-to-programming-with-r-and-use-of-unix-shell-and-git-plus-data-carpentry-processing-and-visualization-of-genomic-datasets Workshops in bioinformatics and statistics CBBU, COMBINE, and SCU are organizing a series of introductory bioinformatics and statistics workshops. The workshops are primarily aimed at students, postdocs and early-mid career researchers, but are open to everybody from our College. 2016-04-11 09:00:00 UTC 2016-04-13 00:00:00 UTC Australian National University Canberra, Australia Canberra Australia Bioinformatics Data visualisation Data management [] [] [] workshops_and_courses [] ABRBioinformaticsSoftwareCarpentry
  • Differential Gene Expression Analysis with R (microarray and NGS)

    25 May 2016

    Brisbane, Australia

    Differential Gene Expression Analysis with R (microarray and NGS) https://tess.elixir-europe.org/events/differential-gene-expression-analysis-with-r-microarray-and-ngs This hands-on workshop will introduce users of the R software environment to the specific skills and applications used in the analysis of microarray and next-generation sequencing (NGS) data. Practical exercises will include quality control and normalisation of data for differential gene expression, and linking genomic information to external public datasets. Recommended participants Biologists and bioinformaticians wishing to use R for RNA expression analysis. Prior expertise with R and the command line interface is required, to a level equivalent of that provided by the QFAB workshop “Introduction to R”. What will I learn? During this course you will learn about: Pre-processing and quality control of microarray and RNA-Seq data The use of R packages for the identification of differentially-expressed genes from expression data Systems biology interpretation of gene lists using pathway analysis Integration of expression and genome data with Ensembl databases After this course you should be able to: Import Affymetrix CEL files to R as data objects Carry out standard QC tests on microarray and RNA-Seq datasets Use the limma-voom R package to produce lists of differentially expressed genes between pairs of samples Identify over-represented gene ontology categories in gene lists using the GOStats package 2016-05-25 09:00:00 UTC 2016-05-25 00:00:00 UTC University of Queensland, Brisbane, Australia University of Queensland Brisbane Australia Sequencing Gene expression Data architecture, analysis and design [] [] [] workshops_and_courses [] ABRQFABR
  • RNA-Seq Analysis Using Galaxy

    26 - 27 May 2016

    Sydney, Australia

    RNA-Seq Analysis Using Galaxy https://tess.elixir-europe.org/events/rna-seq-analysis-using-galaxy RNA-Seq Analysis Using Galaxy is a one-day, workshop that introduces the concepts of RNA-Seq analysis. This workshop provides hands-on experience with RNA-Seq data preparation, statistical testing for differential gene expression, identifying novel transcription features and generating graphical summaries of RNA-Seq data. The workshop will focus on the use of Galaxy, a platform that provides a simple and user-friendly interface to bioinformatics tools, and will also feature an introduction to the R environment used widely by bioinformaticians. 2016-05-26 09:00:00 UTC 2016-05-27 00:00:00 UTC Children’s Medical Research Institute Sydney, Australia Sydney Australia Biomedical science RNA-Seq Bioinformatics [] [] [] workshops_and_courses [] BPAABRBioinformatics
  • Software Carpentry with R COMBINE Workshop

    11 - 12 July 2016

    Brisbane, Australia

    Software Carpentry with R COMBINE Workshop https://tess.elixir-europe.org/events/software-carpentry-with-r-combine-workshop This Software Carpentry with R workshop is a tie-in to the 2016 UQ Winter School in Mathematical and Computational Biology. The workshop is being brought to you by COMBINE. Attendees must have registered for at least some part of the UQ Winter School. 2016-07-11 09:00:00 UTC 2016-07-12 00:00:00 UTC University of Queensland Brisbane, Australia Brisbane Australia Data architecture, analysis and design Computer science Bioinformatics [] [] [] workshops_and_courses [] ABRCOMBINEBioinformatics
  • Intro to Unix at USYD Camperdown

    21 September 2016

    Sydney, Australia

    Intro to Unix at USYD Camperdown https://tess.elixir-europe.org/events/intro-to-unix-at-usyd-camperdown This is a one day introductory workshop to Unix presented by Intersect Australia. Every attendee is given dedicated training environment for the duration of the workshop, with all software and data fully loaded and ready to run. The course is taught within a GNU/Linux environment. This is best characterised as a Unix-like environment. The skills learnt from this course are generally transferable to other Unix environments. Who can access Intersect training services? * Researchers, research groups, and Higher-Degree Research students from any Intersect member organisation. * For people and organisations outside the Intersect membership, training can be provided on a fee-for-service basis. Please email: training@intersect.org.au. 2016-09-21 09:00:00 UTC 2016-09-21 00:00:00 UTC University of Sydney Camperdown, Sydney, Australia Camperdown Sydney Australia Computer science [] [] [] workshops_and_courses [] ABR
  • Excel Fu: Excel for Researchers at USYD Camperdown

    26 September 2016

    Sydney, Australia

    Excel Fu: Excel for Researchers at USYD Camperdown https://tess.elixir-europe.org/events/excel-fu-excel-for-researchers-at-usyd-camperdown This introductory-intermediate level workshop presented by Intersect Australia runs over one day and comprises a series of hands-on exercises modelled around a mock research project. Attendees will leave with two key skills – how to handle their research data within Excel, and how to use advanced features of Excel to answer research questions pertaining to their data. Who can access Intersect training services? * Researchers, research groups, and Higher-Degree Research students from any Intersect member organisation. * For people and organisations outside the Intersect membership, training can be provided on a fee-for-service basis. Please email: training@intersect.org.au 2016-09-26 09:00:00 UTC 2016-09-26 00:00:00 UTC University of Sydney Camperdown, Sydney, Australia Camperdown Sydney Australia Data management Data architecture, analysis and design Computer science [] [] [] workshops_and_courses [] ABR
  • Excel Fu: Excel for Researchers at UNSW Kensington

    26 September 2016

    Sydney, Australia

    Excel Fu: Excel for Researchers at UNSW Kensington https://tess.elixir-europe.org/events/excel-fu-excel-for-researchers-at-unsw-kensington This introductory-intermediate level workshop presented by Intersect Australia runs over one day and comprises a series of hands-on exercises modelled around a mock research project. Attendees will leave with two key skills – how to handle their research data within Excel, and how to use advanced features of Excel to answer research questions pertaining to their data. Who can access Intersect training services? * Researchers, research groups, and Higher-Degree Research students from any Intersect member organisation. * For people and organisations outside the Intersect membership, training can be provided on a fee-for-service basis. Please email: training@intersect.org.au 2016-09-26 09:00:00 UTC 2016-09-26 00:00:00 UTC University of New South Wales Kensington, Sydney, Australia Kensington Sydney Australia Data management Data architecture, analysis and design Computer science [] [] [] workshops_and_courses [] ABR
  • Software Carpentry at UNSW Kensington

    27 - 28 September 2016

    Sydney, Australia

    Software Carpentry at UNSW Kensington https://tess.elixir-europe.org/events/software-carpentry-at-unsw-kensington This intensive 2-day workshop delivered by Intersect Australia is a live coding workshop where everyone writes programs that produce results, using the researcher-focused training modules from the highly regarded Software Carpentry Foundation (software-carpentry.org). Every attendee is given access to their own dedicated Linux virtual machine for the duration of the workshop, with all required software and data fully loaded and ready to run. Who can access Intersect training services? * Researchers, research groups, and Higher-Degree Research students from any Intersect member organisation. * For people and organisations outside the Intersect membership, training can be provided on a fee-for-service basis. Please email: training@intersect.org.au 2016-09-27 09:00:00 UTC 2016-09-28 00:00:00 UTC University of New South Wales Kensington, Sydney, Australia Kensington Sydney Australia Software engineering Computer science [] [] [] workshops_and_courses [] ABRSoftwareCarpentry
  • Introduction to Version Control with Git at USYD Camperdown

    27 September 2016

    Sydney, Australia

    Introduction to Version Control with Git at USYD Camperdown https://tess.elixir-europe.org/events/introduction-to-version-control-with-git-at-usyd-camperdown This intensive half-day workshop presented by Intersect Australia is aimed at researchers and higher degree research students (HDRs) who would like to learn how to safely store their code and data under version control in Git. The workshop is hands-on, using teaching materials from the comprehensive Software Carpentry lessons, alternating short tutorials with practical exercises. Who can access Intersect training services? * Researchers, research groups, and Higher-Degree Research students from any Intersect member organisation. * For people and organisations outside the Intersect membership, training can be provided on a fee-for-service basis. Please email: training@intersect.org.au. 2016-09-27 09:00:00 UTC 2016-09-27 00:00:00 UTC University of Sydney Camperdown, Sydney, Australia Camperdown Sydney Australia Computer science Software engineering [] [] [] workshops_and_courses [] ABRSoftwareCarpentry
  • Introduction to Programming with MATLAB at USYD Camperdown

    30 September 2016

    Sydney, Australia

    Introduction to Programming with MATLAB at USYD Camperdown https://tess.elixir-europe.org/events/introduction-to-programming-with-matlab-at-usyd-camperdown This intensive one day workshop presented by Intersect Australia is aimed at researchers and higher degree research students (HDRs) who would like to learn basic programming concepts in a friendly, research-oriented environment. Programming concepts will be illustrated using MATLAB code examples that build over the course of the day to complete a common research activity: data analysis. Who can access Intersect training services? * Researchers, research groups, and Higher-Degree Research students from any Intersect member organisation. * For people and organisations outside the Intersect membership, training can be provided on a fee-for-service basis. Please email: training@intersect.org.au. 2016-09-30 09:00:00 UTC 2016-09-30 00:00:00 UTC University of Sydney Camperdown, Sydney, Australia Camperdown Sydney Australia Computer science Software engineering [] [] [] workshops_and_courses [] ABR
  • Introduction to R and RStudio

    31 October 2016

    Canberra, Australia

    Introduction to R and RStudio https://tess.elixir-europe.org/events/introduction-to-r-and-rstudio Introduction to R and RStudio co-organized with Teresa Neeman from Australian National University Statistical Consulting Unit. The workshop will be over 2 half-days 31/10 and 1/11 9:30am - 1:30pm, and will cover basic concepts in R, including: introduction to R and RStudio, importing and graphing data, basic data processing, and statistics, good coding practice. The short course will help you to be more confident using R and will prepare you for understanding statistical modelling in R. This workshop is for R and RStudio novices. No previous experience in R or RStudio is expected. We especially invite mid-year honours students. Please note that this workshop was already advertised to honours students by Giel Van Dooren. To sign up please email no later than October 7th. The workshops are offered at no cost. 2016-10-31 09:00:00 UTC 2016-10-31 00:00:00 UTC Australian National University Canberra, Australia Canberra Australia Data visualisation Data management [] [] [] workshops_and_courses [] ABRBioinformatics
  • Data Processing in R for beginners

    8 November 2016

    Canberra, Australia

    Data Processing in R for beginners https://tess.elixir-europe.org/events/data-processing-in-r-for-beginners Data Processing in R for beginners co-organized with Janet Gardner from EEG. This will be a 6 hours workshop on 8/11 9:30 - 12:30 - lunch break - 1:00pm - 4:00pm and will be covering: Brief introduction to R and RStudio. Data types in R, and type conversions. Loading and saving tab and coma delimited files. Data exploration: basic statistic (mean, std. deviation and so on), basic plots (dotplots and histograms). Data sub-setting and filtering. Adding new columns with calculated values. Find-and-replace for values in a column. Detecting and handling errors an missing values in the data. Designing an appropriate structure for a spreadsheet. Joining datasets. Programming - creating functions in R. To sign up please email marcin.adamski@anu.edu.au no later than October 7th. The workshops are offered at no cost. 2016-11-08 09:00:00 UTC 2016-11-08 00:00:00 UTC Australian National University Canberra, Australia Canberra Australia Bioinformatics Data visualisation Data management [] [] [] workshops_and_courses [] ABRBioinformatics
  • Data Processing in R for advanced users

    15 November 2016

    Canberra, Australia

    Data Processing in R for advanced users https://tess.elixir-europe.org/events/data-processing-in-r-for-advanced-users Data Processing in R for advanced users co- organized with Janet Gardner from EEG. This will be a 6 hours workshop on 15/11 9:30 - 12:30 - lunch break - 1:00pm - 4:00pm covering the same subjects as workshop #2 but will be much more focused on writing code (programming in R) and practical exercises and will skip the basics. To sign up please email marcin.adamski@anu.edu.au no later than October 7th. The workshops are offered at no cost. 2016-11-15 09:00:00 UTC 2016-11-15 00:00:00 UTC Australian National University Canberra, Australia Canberra Australia Bioinformatics Data visualisation Data management [] [] [] workshops_and_courses [] ABRBioinformatics
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