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  • R for data science

    31 March - 3 April 2020

    Liverpool, United Kingdom

    R for data science https://tess.elixir-europe.org/events/r-for-data-science The course covered content for these learning objectives: To write your own custom functions To use for loops, apply functions and if statements To analyse large matrices of data in a semi-automated way To normalise data To quantify and correct batch effect To undertake the most common clustering algorithms including k-means and hierarchical To perform variable selection and present these results in different plots including heatmaps To do 2-way ANOVA To undertake multivariate modelling A brief introduction to machine learning. The course included brief theoretical introductions followed by hands on exercises based on real life research examples. 2020-03-31 09:00:00 UTC 2020-04-03 17:00:00 UTC Computational Biology Facility University of Liverpool, Liverpool, United Kingdom University of Liverpool Liverpool Merseyside United Kingdom L69 3GH Statistics and probability Bioinformatics University of Liverpool Computational Biology Facility (cbf@liverpool.ac.uk) [] [] 20 workshops_and_courses registration_of_interest R ProgrammingStatistical-model Statistics Pre-processingTranscriptomicsMetabolomicsProteomics
  • R for beginners

    1 - 3 April 2020

    Liverpool, United Kingdom

    R for beginners https://tess.elixir-europe.org/events/r-for-beginners R is a programming language and free software environment for statistical computing and graphics supported by the R Foundation for Statistical Computing. This course covers: Day 1: Foundations of R: get familiar with R, R studio, operators, variables, functions, directories and the script editor Day 2: Visualisation in basic R (boxplots, scatterplots, line graphs and histograms) and ggplot2 (same types of plots and also manipulation of data for use within this package as well as simple linear regression) Day 3: Introduction to statistical analyses in R: univariate statistics (choosing the right test, checking data assumptions, calculating and extracting the values to report in publications) and Principal Component Analysis (calculation and visualisation with ggplot2) Extra materials: Introduction to the Tidyverse, Introduction to for loops All materials have been built using relevant life sciences/clinical examples. The course has been designed to introduce R from the very basics. Therefore applicants do not need any prior experience to attend, just the desire to learn R. Real life examples with bioinformatic applications are included. 2020-04-01 09:00:00 UTC 2020-04-03 17:00:00 UTC Computational Biology Facility University of Liverpool, Liverpool, United Kingdom University of Liverpool Liverpool Merseyside United Kingdom L69 3GH Computational biology Statistics and probability University of Liverpool Computational Biology Facility (cbf@liverpool.ac.uk) [] [] workshops_and_courses first_come_first_served R-programmingbiostatistics Statistics R programminglife sciences, bioinformaticsClinical Bioinformatics
  • Metagenomics Workshop

    15 - 17 April 2020

    Liverpool

    Metagenomics Workshop https://tess.elixir-europe.org/events/metagenomics-workshop 2020-04-15 09:00:00 UTC 2020-04-17 16:00:00 UTC Matthew Gemmell Sherrington Building, Ashton Street, University of Liverpool, Liverpool Sherrington Building, Ashton Street, University of Liverpool Liverpool United Kingdom L69 3GE [] [] [] 50 workshops_and_courses [] Metagenomics
  • Single-Cell RNAseq Training Course 2020 - POSTPONED

    20 - 25 April 2020

    Norwich, United Kingdom

    Single-Cell RNAseq Training Course 2020 - POSTPONED https://tess.elixir-europe.org/events/single-cell-rnaseq-training-course-2020-1444ff72-59f8-4c26-bc86-813bc4ee8efd The course will provide an introduction to Single-Cell Genomics for bench-based researchers with no required prior experience of computational data analysis. It covers several aspects such as the experimental design, cell sorting and processing for production of high-quality samples for sequencing, generation of sequencing data, assessing the quality of sequence data, data visualisation, differential expression analyses and identifying Copy Number Variations at the single-cell level. Options when applying are: Single-Cell RNAseq Course (Mon-Fri: lab and bioinformatics @800) Single-Cell RNAseq Bioinformatics only (Weds-Fri @£300) 2020-04-20 09:00:00 UTC 2020-04-25 00:00:00 UTC Earlham Institute Earlham Institute (EI), Colney Lane, Norwich, United Kingdom Earlham Institute (EI), Colney Lane Norwich Norfolk United Kingdom NR4 7UZ [] training @ earlham . ac . uk [] PhD studentspost-docsBench biologists workshops_and_courses registration_of_interest []
  • Genome Annotation Workshop 2020

    13 May 2020

    Norwich, United Kingdom

    Genome Annotation Workshop 2020 https://tess.elixir-europe.org/events/genome-annotation-workshop-2020 With the fast-moving pace of sequencing technology and the plethora of options available to you, it can be difficult to know which is the optimal platform for your biological question and therefore how to design your experiment for maximum return from your samples. Once you’ve got the data, how do you know if what you’ve got is good enough quality? We’ll take you through the latest developments in sequencing technology, identify common challenges in producing good RNA for sequencing, help you to understand what you can expect from your data and what you can do with it. 2020-05-13 09:00:00 UTC 2020-05-13 17:00:00 UTC Earlham Institute Earlham Institute (EI), Colney Lane, Norwich, United Kingdom Earlham Institute (EI), Colney Lane Norwich Norfolk United Kingdom NR4 7UZ Earlham Institute training@earlham.ac.uk [] Advanced PhD studentspost-docs [] first_come_first_served genome annotationNext Generation Sequencing technologies
  • ELIXIR All Hands 2020

    8 - 11 June 2020

    Amsterdam, Netherlands

    ELIXIR All Hands 2020 https://tess.elixir-europe.org/events/elixir-all-hands-2020 The ELIXIR All Hands 2020 will be held in the Eye Filmmuseum, Amsterdam. Timeline 21 October - 15 November 2019 Call for workshops and Call for presentations. December 2019 Selection of presentations and workshops. 7 February 2020 Accepted presentations (incl. talks, demonstrations and posters) announced by this date. 24 February 2020 Registration opens for 300 delegates on a first come, first served basis. 1 March 2020 Registration closed, reserve list available. Deadline for poster submissions, or earlier, if capacity is reached. Submission of posters is re-opened. Priority will be given to those participants that have not previously submitted a poster. 31 March 2020 Deadline for poster submissions, or earlier, if capacity is reached. Submission of posters is re-opened. Priority will be given to those participants that have not previously submitted a poster and those already registered. Accommodation For 2020 All Hands meeting, ELIXIR will not have a block reservation for accommodation, but each participant will need to book their own accommodation. The venue is located in central Amsterdam with plenty of options, but keep in mind that June is a busy month in the city and therefore it is recommended to reserve accommodation early. Walking distance hotels from venue Eye Film Museum: Sir Adam Hotel Park Plaza Victoria Ibis Styles Hotel Ibis Amsterdam Central Station Multatuli Hotel Registration The registration to the All Hands meeting is now closed until all speakers have been registered. You can add yourself to the reserve list if you log in to the site and return to this page. You will see the registration link at the top of the page once you are logged in. More spaces may become available later on and will be allocated to people on the reserve list on a first come, first served basis. Code of Conduct The ELIXIR Code of Conduct has been created to ensure that people at ELIXIR events can interact with each other in a respectful and safe environment. It provides ways you can voice your concern if you believe there has been a breach to this Code of Conduct. The ELIXIR Code of Conduct will be in place at this event. Social activities This Google doc lists recommended tourist sites, social activities and things to do in your free time. Note: The All Hands meeting ends on Thursday 11 Jun 2020 at 11:00 CEST. After the end of the meeting, there are two project meetings taking place starting at 11:00 CEST. These are the CONVERGE AGM and the Federated Human Data Strategic Implementation Study meeting. Both of these meetings are restricted to named project partners. 2020-06-08 12:00:00 UTC 2020-06-11 11:00:00 UTC Eye Filmmuseum, Amsterdam, Netherlands Eye Filmmuseum Amsterdam Netherlands 1031 KT [] [] [] meetings_and_conferences [] []
  • CABANA: Bioinformatics for Plant Biology

    30 November - 4 December 2020

    San Jose, Costa Rica

    Elixir node event
    CABANA: Bioinformatics for Plant Biology https://tess.elixir-europe.org/events/cabana-bioinformatics-for-plant-biology We are currently developing the course programme for 2020, and as further information about the course becomes available we will update this page. 2020-11-30 09:00:00 UTC 2020-12-04 17:00:00 UTC University of Costa Rica (UCR), San Jose, Costa Rica University of Costa Rica (UCR) San Jose Costa Rica CB10 1SD [] Marina Pujol [] [] [] [] HDRUK

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