Protein structures: production prowess, power, promises, and problems
31 October - 4 November 2011
Nijmegen, NetherlandsProtein structures: production prowess, power, promises, and problems http://www.nbic.nl/education/nbic-phd-school/course-schedule/protein-structures-production-prowess-power-promises-and-problems/ https://tess.elixir-europe.org/events/protein-structures-production-prowess-power-promises-and-problems 2011-10-31 00:00:00 UTC 2011-11-04 00:00:00 UTC NBIC Center for Molecular and Biomolecular Informatics (CMBI), Nijmegen, Netherlands Center for Molecular and Biomolecular Informatics (CMBI) Nijmegen Netherlands Proteomics    workshops_and_courses  
Innovations in Renewable Energies
27 April 2012
Liverpool, United KingdomInnovations in Renewable Energies http://www.regonline.co.uk/builder/site/Default.aspx?EventID=1013678 https://tess.elixir-europe.org/events/innovations-in-renewable-energies 2012-04-27 00:00:00 UTC 2012-04-27 00:00:00 UTC EuroSciCon Liverpool John Moore’s University, Liverpool, United Kingdom Liverpool John Moore’s University Liverpool United Kingdom    meetings_and_conferences  
Autumn School "Biomolecular Structure and Function - Computational Approaches"
4 - 8 December 2012
Nijmegen, NetherlandsAutumn School "Biomolecular Structure and Function - Computational Approaches" http://swift.cmbi.ru.nl/autumnschoolbioinformatics/ https://tess.elixir-europe.org/events/autumn-school-biomolecular-structure-and-function-computational-approaches 2012-12-04 00:00:00 UTC 2012-12-08 00:00:00 UTC NSBM/NBIC Radboud University Nijmegen Medical Centre, Nijmegen, Netherlands Radboud University Nijmegen Medical Centre Nijmegen Netherlands Bioinformatics    workshops_and_courses  
10 - 11 December 2012
Nijmegen, NetherlandsBBC12 http://www.nbic.nl/bbc2012 https://tess.elixir-europe.org/events/bbc12 2012-12-10 00:00:00 UTC 2012-12-11 00:00:00 UTC NBIC/CMBI Nijmegen, Netherlands Nijmegen Netherlands Bioinformatics    meetings_and_conferences  
RNA-seq data analysis
30 October - 1 November 2013
Nijmegen, NetherlandsRNA-seq data analysis http://www.nbic.nl/education/nbic-phd-school/course-schedule/ngsrnaseq/ https://tess.elixir-europe.org/events/rna-seq-data-analysis 2013-10-30 00:00:00 UTC 2013-11-01 00:00:00 UTC NBIC Nijmegen, Netherlands Nijmegen Netherlands Metagenomics Bioinformatics    workshops_and_courses  
Protein structures: production, prowess, power, promises, and problems
4 - 8 November 2013
Nijmegen, NetherlandsProtein structures: production, prowess, power, promises, and problems http://www.nbic.nl/education/nbic-phd-school/course-schedule/protein-structures-production-prowess-power-promises-and-problems/#__1 https://tess.elixir-europe.org/events/protein-structures-production-prowess-power-promises-and-problems-9f6cd436-4a6c-4d76-84b4-0ccea64164b2 2013-11-04 00:00:00 UTC 2013-11-08 00:00:00 UTC NBIC Nijmegen, Netherlands Nijmegen Netherlands    workshops_and_courses  
Multiple Sequence Alignment with Jalview and Protein Structure and Function Modelling
14 - 15 May 2018
Liverpool, United KingdomMultiple Sequence Alignment with Jalview and Protein Structure and Function Modelling http://www.jalview.org/training/training-courses/Multiple-Sequence-Alignment-with-Jalview-and-Protein-Structure-and https://tess.elixir-europe.org/events/multiple-sequence-alignment-with-jalview-and-protein-structure-and-function Date: Monday 14th to Tuesday 15th May 2018 Time: 9.00 to 17.00 Location: MSTC, Sherrington Building, University of Liverpool, L69 3BX Overview This two day hands-on training course is aimed at students and researchers who want to gain practical understanding of the tools and approaches for protein sequence, structure and function prediction and analysis. In day 1, participants will be introduced to Jalview - a free desktop application for the visualisation and comparative analysis of protein, DNA and RNA sequences. Jalview can integrate data from Ensembl, Uniprot, PDBe, Rfam and Pfam, and can access a range of tools for multiple sequence alignment, conservation analysis and secondary structure and disorder prediction, including the widely used JPred4. On the second day, participants will learn to use Jalview’s 3D structure visualisation capabilities in conjunction with UCSF Chimera, and take a whistle-stop tour of the methodologies and tools for prediction and analysis of Protein 3D structure and function. Participants are encouraged to bring their own protein analysis problems and time will be reserved at the end of day 2 for discussion. Register using the link on the Jalview website: http://www.jalview.org/training/training-courses/Multiple-Sequence-Alignment-with-Jalview-and-Protein-Structure-and Day 1: Multiple Sequence Alignment and Analysis with Jalview Workshop trainers: Dr Jim Procter and Dr Suzanne Duce 9 9.15 Introduction to the Workshop 9.15 10.30 Session 1.Loading sequences, structures and alignments with Jalview Coffee break 11 12.30 Session 2. Multiple alignment Creation and Alignment Reliability Lunch 1.30 3pm Session 3. Phylogenetic trees and subfamily analysis of Proteins and CDS Coffee break 3.30 5pm Session 4. Protein secondary structure and disorder prediction, and working with annotation Day 2: Protein Structure Analysis and Modelling Workshop trainers: Dr Jim Procter and Dr Dan Rigden 9 9.15 Introduction to Workshop Day 2 9.15 9.30 Introduction to Protein 3D Structure 9.30 10 Viewing and Comparing 3D structures with Jalview and UCSF Chimera 10 10.30 Mapping sequence conservation to Biological Assemblies with Jalview Coffee Break 11 12.30 Functional analysis of Protein Structures Lunch 1.30 2.30 Homology modelling and model quality evaluation 2.30 3.15 Ab initio models and searching for fold matches 3.15 3.30 Wrap up: Function Analysis and 3D models Coffee Break 4pm 5pm Analyse your own protein sequences and structures. 2018-05-14 09:00:00 UTC 2018-05-15 17:00:00 UTC Dr Jim Procter and Dr Dan Rigden MSTC, Sherrington Building, University of Liverpool, Liverpool, United Kingdom MSTC, Sherrington Building, University of Liverpool Liverpool Merseyside United Kingdom L69 3BX University of Liverpool Dr Jim Procter and Dr Suzanne Duce, School of Life Sciences, University of Dundee, Dundee University of Dundee PhD studentspostdoctoral researchersprinciple investigatorsLife Science Researchersbioinformaticians 45 workshops_and_courses registration_of_interest Jalviewmultiple sequence alignmentMSAprotein sequence protein structure protein predictionHomology modellingAb initio modelsChimerasubfamily analysisPhylogenetic treesProtein secondary structureUniversity of DundeeUniversity of Liverpool
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