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  • Protein structures: production prowess, power, promises, and problems

    31 October - 4 November 2011

    Nijmegen, Netherlands

    Protein structures: production prowess, power, promises, and problems https://tess.elixir-europe.org/events/protein-structures-production-prowess-power-promises-and-problems 2011-10-31 00:00:00 UTC 2011-11-04 00:00:00 UTC NBIC Center for Molecular and Biomolecular Informatics (CMBI), Nijmegen, Netherlands Center for Molecular and Biomolecular Informatics (CMBI) Nijmegen Netherlands Proteomics [] [] [] workshops_and_courses [] []
  • Innovations in Renewable Energies

    27 April 2012

    Liverpool, United Kingdom

    Innovations in Renewable Energies https://tess.elixir-europe.org/events/innovations-in-renewable-energies 2012-04-27 00:00:00 UTC 2012-04-27 00:00:00 UTC EuroSciCon Liverpool John Moore’s University, Liverpool, United Kingdom Liverpool John Moore’s University Liverpool United Kingdom [] [] [] meetings_and_conferences [] []
  • Autumn School "Biomolecular Structure and Function - Computational Approaches"

    4 - 8 December 2012

    Nijmegen, Netherlands

    Autumn School "Biomolecular Structure and Function - Computational Approaches" https://tess.elixir-europe.org/events/autumn-school-biomolecular-structure-and-function-computational-approaches 2012-12-04 00:00:00 UTC 2012-12-08 00:00:00 UTC NSBM/NBIC Radboud University Nijmegen Medical Centre, Nijmegen, Netherlands Radboud University Nijmegen Medical Centre Nijmegen Netherlands Bioinformatics [] [] [] workshops_and_courses [] []
  • BBC12

    10 - 11 December 2012

    Nijmegen, Netherlands

    BBC12 https://tess.elixir-europe.org/events/bbc12 2012-12-10 00:00:00 UTC 2012-12-11 00:00:00 UTC NBIC/CMBI Nijmegen, Netherlands Nijmegen Netherlands Bioinformatics [] [] [] meetings_and_conferences [] []
  • RNA-seq data analysis

    30 October - 1 November 2013

    Nijmegen, Netherlands

    RNA-seq data analysis https://tess.elixir-europe.org/events/rna-seq-data-analysis 2013-10-30 00:00:00 UTC 2013-11-01 00:00:00 UTC NBIC Nijmegen, Netherlands Nijmegen Netherlands Metagenomics Bioinformatics [] [] [] workshops_and_courses [] []
  • Protein structures: production, prowess, power, promises, and problems

    4 - 8 November 2013

    Nijmegen, Netherlands

    Protein structures: production, prowess, power, promises, and problems https://tess.elixir-europe.org/events/protein-structures-production-prowess-power-promises-and-problems-9f6cd436-4a6c-4d76-84b4-0ccea64164b2 2013-11-04 00:00:00 UTC 2013-11-08 00:00:00 UTC NBIC Nijmegen, Netherlands Nijmegen Netherlands [] [] [] workshops_and_courses [] []
  • Multiple Sequence Alignment with Jalview and Protein Structure and Function Modelling

    14 - 15 May 2018

    Liverpool, United Kingdom

    Elixir node event
    Multiple Sequence Alignment with Jalview and Protein Structure and Function Modelling https://tess.elixir-europe.org/events/multiple-sequence-alignment-with-jalview-and-protein-structure-and-function Date: Monday 14th to Tuesday 15th May 2018 Time: 9.00 to 17.00 Location: MSTC, Sherrington Building, University of Liverpool, L69 3BX Overview This two day hands-on training course is aimed at students and researchers who want to gain practical understanding of the tools and approaches for protein sequence, structure and function prediction and analysis. In day 1, participants will be introduced to Jalview - a free desktop application for the visualisation and comparative analysis of protein, DNA and RNA sequences. Jalview can integrate data from Ensembl, Uniprot, PDBe, Rfam and Pfam, and can access a range of tools for multiple sequence alignment, conservation analysis and secondary structure and disorder prediction, including the widely used JPred4. On the second day, participants will learn to use Jalview’s 3D structure visualisation capabilities in conjunction with UCSF Chimera, and take a whistle-stop tour of the methodologies and tools for prediction and analysis of Protein 3D structure and function. Participants are encouraged to bring their own protein analysis problems and time will be reserved at the end of day 2 for discussion. Register using the link on the Jalview website: http://www.jalview.org/training/training-courses/Multiple-Sequence-Alignment-with-Jalview-and-Protein-Structure-and Day 1: Multiple Sequence Alignment and Analysis with Jalview Workshop trainers: Dr Jim Procter and Dr Suzanne Duce 9 9.15 Introduction to the Workshop 9.15 10.30 Session 1.Loading sequences, structures and alignments with Jalview Coffee break 11 12.30 Session 2. Multiple alignment Creation and Alignment Reliability Lunch 1.30 3pm Session 3. Phylogenetic trees and subfamily analysis of Proteins and CDS Coffee break 3.30 5pm Session 4. Protein secondary structure and disorder prediction, and working with annotation Day 2: Protein Structure Analysis and Modelling Workshop trainers: Dr Jim Procter and Dr Dan Rigden 9 9.15 Introduction to Workshop Day 2 9.15 9.30 Introduction to Protein 3D Structure 9.30 10 Viewing and Comparing 3D structures with Jalview and UCSF Chimera 10 10.30 Mapping sequence conservation to Biological Assemblies with Jalview Coffee Break 11 12.30 Functional analysis of Protein Structures Lunch 1.30 2.30 Homology modelling and model quality evaluation 2.30 3.15 Ab initio models and searching for fold matches 3.15 3.30 Wrap up: Function Analysis and 3D models Coffee Break 4pm 5pm Analyse your own protein sequences and structures. 2018-05-14 09:00:00 UTC 2018-05-15 17:00:00 UTC Dr Jim Procter and Dr Dan Rigden MSTC, Sherrington Building, University of Liverpool, Liverpool, United Kingdom MSTC, Sherrington Building, University of Liverpool Liverpool Merseyside United Kingdom L69 3BX University of Liverpool Dr Jim Procter and Dr Suzanne Duce, School of Life Sciences, University of Dundee, Dundee University of Dundee PhD studentspostdoctoral researchersprinciple investigatorsLife Science Researchersbioinformaticians 45 workshops_and_courses registration_of_interest Jalviewmultiple sequence alignmentMSAprotein sequence protein structure protein predictionHomology modellingAb initio modelsChimerasubfamily analysisPhylogenetic treesProtein secondary structureUniversity of DundeeUniversity of Liverpool
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