20 - 22 February 2017
Leuven, BelgiumGATK workshop http://www.vib.be/en/training/research-training/courses/Pages/GATK-Best-practices-for-variant-discovery.aspx https://tess.elixir-europe.org/events/gatk-workshop This workshop will focus on the core steps involved in calling variants with the Broad’s Genome Analysis Toolkit, using the “Best Practices” developed by the GATK team. You will learn why each step is essential to the variant discovery process what are the operations performed on the data at each step how to use the GATK tools to get the most accurate and reliable results out of your dataset. • samtools Familiarity with Please note that this workshop is focused on human data analysis. The majority of the materials presented does apply equally to non-human data, and we will address some questions regarding adaptations that are needed for analysis of non-human data, but we will not go into much detail on those points. The training will take 3 days, you can register for each day separately 2017-02-20 09:30:00 UTC 2017-02-22 17:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Vlaams-Brabant Belgium 3010 Sequence analysis      GATKBroad's Genome Analysis Toolkit
OpenRiskNet/NanoCommons ontology meeting
13 - 14 December 2018
Brussels, BelgiumOpenRiskNet/NanoCommons ontology meeting https://openrisknet.org/events/45/ https://tess.elixir-europe.org/events/openrisknet-nanocommons-ontology-meeting The goal of this meeting is to get a picture of the ongoing ontology activities in the toxicology area, harmonize these efforts and the developed ontologies therein, and extend the existing toxicology ontology to support OpenRiskNet and NanoCommons tasks. Part of this will be the ontological annotation of OpenRiskNet Application Programming Interfaces (APIs) as used on their cloud. Other goals include extension of the ontology with missing terms (if any), potentially write up guidance documents, and annotation of data sets (possible via OpenRiskNet data APIs). 2018-12-13 13:00:00 UTC 2018-12-14 14:00:00 UTC University of Birmingham office in Brussels, Brussels, Belgium University of Birmingham office in Brussels Brussels Belgium Ontology and terminology Toxicology  NanoCommonsOpenRiskNetH2020  workshops_and_courses  risk assessmentnanosafetydata annotationservice descriptions
3 October 2019
Leuven, BelgiumLinux Introduction https://www.vscentrum.be/events/linux-introduction https://tess.elixir-europe.org/events/linux-introduction-88e35601-7e20-4a65-8451-ad4baff0ed63 This course will give a short practical summary of the basic things one needs when using mainly the command line in Linux: Overview and distributions How to start working with Linux Short introduction to Graphical User Interface Command line basics: getting help, useful commands Linux File System: navigating, file paths, file manipulation, disk space, archiving Text editing Groups, users, security: access rights Process control This course provides several hands-on sessions 2019-10-03 09:00:00 UTC 2019-10-03 13:00:00 UTC Vlaams Supercomputer Centrum Willem de Croylaan 52, 52, Willem de Croylaan, Leuven, Belgium Willem de Croylaan 52, 52, Willem de Croylaan Leuven Vlaams-Brabant Belgium 3001    workshops_and_courses first_come_first_served Linux basics
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