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14 events found

Target audience: PhD students 

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City: Bogota  or Bethesda  or Chicago  or Zurich  or Istanbul  or Oeiras  or Oslo  or Liverpool 

  • Genome assembly and annotation course 3

    23 - 27 October 2017

    Oeiras, Portugal

    Elixir node event
    Genome assembly and annotation course 3 https://tess.elixir-europe.org/events/genome-assembly-and-annotation-course-3 ELIXIR Genome assembly and annotation course 3, Oct 23-27 2017 at the Gulbenkian Institute of Science, Oeiras, Portugal 2017-10-23 09:00:00 UTC 2017-10-27 17:00:00 UTC ELIXIR PT, Instituto Gulbenkian Instituto Gulbenkian de Ciência (IGC), 6, Rua Quinta Grande, Oeiras, Portugal Instituto Gulbenkian de Ciência (IGC), 6, Rua Quinta Grande Oeiras Portugal Genomics Instituto Gulbenkian de Ciência [] life scientistsResearchersPhD students workshops_and_courses registration_of_interest genomics AssemblyTrainingeLearningEeLP
  • Multiple Sequence Alignment with Jalview and Protein Structure and Function Modelling

    14 - 15 May 2018

    Liverpool, United Kingdom

    Elixir node event
    Multiple Sequence Alignment with Jalview and Protein Structure and Function Modelling https://tess.elixir-europe.org/events/multiple-sequence-alignment-with-jalview-and-protein-structure-and-function Date: Monday 14th to Tuesday 15th May 2018 Time: 9.00 to 17.00 Location: MSTC, Sherrington Building, University of Liverpool, L69 3BX Overview This two day hands-on training course is aimed at students and researchers who want to gain practical understanding of the tools and approaches for protein sequence, structure and function prediction and analysis. In day 1, participants will be introduced to Jalview - a free desktop application for the visualisation and comparative analysis of protein, DNA and RNA sequences. Jalview can integrate data from Ensembl, Uniprot, PDBe, Rfam and Pfam, and can access a range of tools for multiple sequence alignment, conservation analysis and secondary structure and disorder prediction, including the widely used JPred4. On the second day, participants will learn to use Jalview’s 3D structure visualisation capabilities in conjunction with UCSF Chimera, and take a whistle-stop tour of the methodologies and tools for prediction and analysis of Protein 3D structure and function. Participants are encouraged to bring their own protein analysis problems and time will be reserved at the end of day 2 for discussion. Register using the link on the Jalview website: http://www.jalview.org/training/training-courses/Multiple-Sequence-Alignment-with-Jalview-and-Protein-Structure-and Day 1: Multiple Sequence Alignment and Analysis with Jalview Workshop trainers: Dr Jim Procter and Dr Suzanne Duce 9 9.15 Introduction to the Workshop 9.15 10.30 Session 1.Loading sequences, structures and alignments with Jalview Coffee break 11 12.30 Session 2. Multiple alignment Creation and Alignment Reliability Lunch 1.30 3pm Session 3. Phylogenetic trees and subfamily analysis of Proteins and CDS Coffee break 3.30 5pm Session 4. Protein secondary structure and disorder prediction, and working with annotation Day 2: Protein Structure Analysis and Modelling Workshop trainers: Dr Jim Procter and Dr Dan Rigden 9 9.15 Introduction to Workshop Day 2 9.15 9.30 Introduction to Protein 3D Structure 9.30 10 Viewing and Comparing 3D structures with Jalview and UCSF Chimera 10 10.30 Mapping sequence conservation to Biological Assemblies with Jalview Coffee Break 11 12.30 Functional analysis of Protein Structures Lunch 1.30 2.30 Homology modelling and model quality evaluation 2.30 3.15 Ab initio models and searching for fold matches 3.15 3.30 Wrap up: Function Analysis and 3D models Coffee Break 4pm 5pm Analyse your own protein sequences and structures. 2018-05-14 09:00:00 UTC 2018-05-15 17:00:00 UTC Dr Jim Procter and Dr Dan Rigden MSTC, Sherrington Building, University of Liverpool, Liverpool, United Kingdom MSTC, Sherrington Building, University of Liverpool Liverpool Merseyside United Kingdom L69 3BX University of Liverpool Dr Jim Procter and Dr Suzanne Duce, School of Life Sciences, University of Dundee, Dundee University of Dundee PhD studentspostdoctoral researchersprinciple investigatorsLife Science Researchersbioinformaticians 45 workshops_and_courses registration_of_interest Jalviewmultiple sequence alignmentMSAprotein sequence protein structure protein predictionHomology modellingAb initio modelsChimerasubfamily analysisPhylogenetic treesProtein secondary structureUniversity of DundeeUniversity of Liverpool
  • Genome sequencing technologies, assembly, variant calling and statistical genomics

    22 October - 2 November 2018

    Oslo, Norway

    Elixir node event
    Genome sequencing technologies, assembly, variant calling and statistical genomics https://tess.elixir-europe.org/events/genome-sequencing-technologies-assembly-variant-calling-and-statistical-genomics-3d1544a3-a560-4b49-9e8c-af9167caea91 2018-10-22 09:00:00 UTC 2018-11-02 17:00:00 UTC NORBIS, the Norwegian national research school in bioinformatics, biostatistics and systems biology Gaustadalléen 23, 23, Gaustadalléen, Oslo, Norway Gaustadalléen 23, 23, Gaustadalléen Oslo Oslo kommune Norway Sequencing Statistics and probability Bioinformatics Genomics university of Oslo contact-norbis@uib.no NORBIS PhD studentsPost DocsResearchers [] registration_of_interest genomicsbioinformaticsGenome sequence analysis
  • Bioinformatics of long read sequencing

    8 - 9 November 2018

    Zurich, Switzerland

    Elixir node event
    Bioinformatics of long read sequencing https://tess.elixir-europe.org/events/bioinformatics-of-long-read-sequencing Please note that this course is over subscribed. 2018-11-08 09:00:00 UTC 2018-11-09 00:00:00 UTC SIB, Zurich, Switzerland SIB Zurich Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • SPHN Data Privacy and IT Security Training

    20 November 2018

    Zurich, Switzerland

    Elixir node event
    SPHN Data Privacy and IT Security Training https://tess.elixir-europe.org/events/sphn-data-privacy-and-it-security-training Overview Within the Swiss Personalized Health Network (SPHN) and related national initiatives researchers use patient data (i.e., confidential human data) in their research projects. 2018-11-20 09:00:00 UTC 2018-11-20 00:00:00 UTC SIB, Zurich, Switzerland SIB Zurich Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • High Performance Computing for genomic applications

    26 - 27 November 2018

    Zurich, Switzerland

    Elixir node event
    High Performance Computing for genomic applications https://tess.elixir-europe.org/events/high-performance-computing-for-genomic-applications-01f41c8d-a78f-4354-b37c-5a1ec697159b Overview The course "High Performance Computing for genomic applications" is organized for the D-BIOL researchers (including PhD students) by Scientific IT Services on 26-27 November 2018. 2018-11-26 09:00:00 UTC 2018-11-27 00:00:00 UTC SIB, Zurich, Switzerland SIB Zurich Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Introduction to statistics

    22 - 25 January 2019

    Zurich, Switzerland

    Elixir node event
    Introduction to statistics https://tess.elixir-europe.org/events/introduction-to-statistics-ffd2c538-293c-4e8d-87c5-f3e6801a564e Please note that this course is full. Overview This course is designed to provide researchers in biomedical sciences with experience in the application of basic statistical analysis techniques to a variety of biological problems. 2019-01-22 09:00:00 UTC 2019-01-25 00:00:00 UTC SIB, Zurich, Switzerland SIB Zurich Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • R-packaging

    5 February 2019

    Zurich, Switzerland

    Elixir node event
    R-packaging https://tess.elixir-europe.org/events/r-packaging-7d99e72f-ed13-45f7-807c-8903907185c0 This course is full. Overview In this course, R programmers will learn how to create R packages, the best way to make R scripts reusable. Participants will learn how to identify and create clear, clean and usable packages in R. 2019-02-05 09:00:00 UTC 2019-02-05 00:00:00 UTC SIB, Zurich, Switzerland SIB Zurich Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Workshop on Computational Biology at biology'19

    6 February 2019

    Zurich, Switzerland

    Elixir node event
    Workshop on Computational Biology at biology'19 https://tess.elixir-europe.org/events/workshop-on-computational-biology-at-biology-19 Overview SIB is co-organizing a workshop on computational biology on 6 Feb 2019 in Zurich, as a satellite event to Biology 2019, the annual Swiss conference on ecology, evolution, systematics and conservation. 2019-02-06 09:00:00 UTC 2019-02-06 00:00:00 UTC SIB, Zurich, Switzerland SIB Zurich Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Introduction to R Shiny

    6 May 2019

    Zurich, Switzerland

    Elixir node event
    Introduction to R Shiny https://tess.elixir-europe.org/events/introduction-to-r-shiny This course is over subscribed. You can still add your name to the waiting list by applying using the button at the bottom of this page. You will only be contacted if a place becomes available. 2019-05-06 09:00:00 UTC 2019-05-06 00:00:00 UTC SIB, Zurich, Switzerland SIB Zurich Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • NeLS hands-on workshop

    3 June 2019

    Oslo, Norway

    Elixir node event
    NeLS hands-on workshop https://tess.elixir-europe.org/events/nels-hands-on-workshop The sixth in a series of hands-on bioinformatics workshops organized in Oslo by ELIXIR. The topic is on how you can use the Norwegian e-Infrastructure for Life Sciences (NeLS) (nels.bioinfo.no) to store and share data, and to run analyses via customizable genomics pipelines (Galaxy). Together, we will go through a complete RNA sequencing analysis pipeline. 2019-06-03 10:00:00 UTC 2019-06-03 14:00:00 UTC ELIXIR UiO node Ole-Johan Dahls hus, 23B, Gaustadalléen, Oslo, Norway Ole-Johan Dahls hus, 23B, Gaustadalléen Oslo Oslo kommune Norway 0373 Data management Bioinformatics RNA-Seq university of Oslo [] PhD studentspost-docs 20 workshops_and_courses first_come_first_served []
  • ELIXIR-SIB Data Carpentry with R - Genomics curriculum

    1 - 2 July 2019

    Zurich, Switzerland

    Elixir node event
    ELIXIR-SIB Data Carpentry with R - Genomics curriculum https://tess.elixir-europe.org/events/elixir-sib-data-carpentry-with-r We are sorry but this course is oversubscribed, with a long waiting list. Keep an eye in our distribution list (sign in here) for the announcements of future courses. 2019-07-01 09:00:00 UTC 2019-07-02 00:00:00 UTC SIB, Zurich, Switzerland SIB Zurich Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Good practice in high-throughput experiments

    30 September - 1 October 2019

    Zurich, Switzerland

    Elixir node event
    Good practice in high-throughput experiments https://tess.elixir-europe.org/events/good-practice-in-high-throughput-experiments Overview This course offers an overview of good practice in high-throughput experiments (e.g. next-generation sequencing or compound screening). Particularly we focus on pitfalls in the design of projects (e.g. 2019-09-30 09:00:00 UTC 2019-10-01 00:00:00 UTC SIB, Zurich, Switzerland SIB Zurich Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Advanced R Shiny

    5 December 2019

    Zurich, Switzerland

    Elixir node event
    Advanced R Shiny https://tess.elixir-europe.org/events/advanced-r-shiny We are sorry but this course is oversubscribed. You can still apply but your name will be place on the waiting list and you will only be contacted in the case a cancellation happens. 2019-12-05 09:00:00 UTC 2019-12-05 00:00:00 UTC SIB, Zurich, Switzerland SIB Zurich Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []

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