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19 events found

Target audience: PhD students 

and

City: Bogota  or Bern  or San Diego  or Lausanne  or Ljubljana  or Berlin 

  • DNA Methylation Data Analysis Workshop

    2 - 5 November 2020

    Berlin, Germany

    DNA Methylation Data Analysis Workshop https://tess.elixir-europe.org/events/dna-methylation-data-analysis-workshop Advance your epigenetics research with NGS methods. In a nutshell - Learn how bisulfite sequencing works - Understand how bisulfite-treated reads are mapped to a reference genome - Perform basic analyses (call methylated regions, perform basic downstream analyses) - Use shell scripting to create reusable data pipelines - Visualize results (ready-to-publish) The purpose of this workshop is to get a deeper understanding of the use of bisulfite-treated DNA in order to analyze the epigenetic layer of DNA methylation. Advantages and disadvantages of the so-called 'bisulfite sequencing' and its implications on data analyses will be covered. The participants will be trained to understand bisulfite-treated NGS data, to detect potential problems/errors and finally to implement their own pipelines. After this course they will be able to analyze DNA methylation and create ready-to-publish graphics. By the end of this workshop the participants will: - be familiar with the sequencing method of Illumina - understand how bisulfite sequencing works - be aware of the mapping problem of bisulfite-treated data - understand how bisulfite-treated reads are mapped to a reference genome - be familiar with common data formats and standards - know relevant tools for data processing - automate tasks with shell scripting to create reusable data pipelines - perform basic analyses (call methylated regions, perform basic downstream analyses) - plot and visualize results (ready-to-publish) - be able to reuse all analyses 2020-11-02 09:00:00 UTC 2020-11-05 17:00:00 UTC ecSeq Bioinformatics GmbH PC-COLLEGE Berlin, 78, Stresemannstraße, Berlin, Germany PC-COLLEGE Berlin, 78, Stresemannstraße Berlin Germany 10963 Sequencing Sequence analysis Bioinformatics [] ecSeq Bioinformatics GmbH Sternwartenstr. 29 D-04103 Leipzig Germany Email: events@ecSeq.com [] BiologistsBiologists, Genomicists, Computer ScientistsMolecular BiologistsPhD studentspost-docsPathologistsbioinformaticians 25 workshops_and_courses first_come_first_served EpigeneticsDNA MethylationBisulfite-Seq
  • Ligand-protein docking, and computer-aided drug design

    3 - 5 November 2020

    Lausanne, Switzerland

    Elixir node event
    Ligand-protein docking, and computer-aided drug design https://tess.elixir-europe.org/events/ligand-protein-docking-and-computer-aided-drug-design-a6576d32-6b99-4155-a68c-d273db65592a This course will take place in Lausanne with rules complying to COVID situation (distances and hygiene). 2020-11-03 09:00:00 UTC 2020-11-05 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • First Steps with Python in Life Sciences

    1 - 3 December 2020

    Lausanne, Switzerland

    Elixir node event
    First Steps with Python in Life Sciences https://tess.elixir-europe.org/events/first-steps-with-python-in-life-sciences This course will take place in Lausanne with rules complying to COVID situation (distances and hygiene), but in the event of new restrictions, the participants will be informed that it will not be cancelled, but streamed. 2020-12-01 09:00:00 UTC 2020-12-03 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • NGS - Genome variant analysis

    8 - 9 December 2020

    Bern, Switzerland

    Elixir node event
    NGS - Genome variant analysis https://tess.elixir-europe.org/events/ngs-genome-variant-analysis-3c6175a8-5953-4030-8caf-ebc32ee36273 This course will take place in Bern with rules complying to the COVID-19 situation (distance and hygiene). 2020-12-08 09:00:00 UTC 2020-12-09 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • First Steps with UNIX in Life Sciences

    12 January 2021

    Lausanne, Switzerland

    Elixir node event
    First Steps with UNIX in Life Sciences https://tess.elixir-europe.org/events/first-steps-with-unix-in-life-sciences-2ff593cf-d240-4e36-900e-7fcfe3dbbd4f This course will take place in Lausanne with rules complying to COVID situation (distances and hygiene). 2021-01-12 09:00:00 UTC 2021-01-12 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Version Control with Git - First Steps

    14 January 2021

    Lausanne, Switzerland

    Elixir node event
    Version Control with Git - First Steps https://tess.elixir-europe.org/events/version-control-with-git-first-steps This course will take place in Lausanne with rules complying to COVID situation (distances and hygiene), but in the event of new restrictions, the participants will be informed that it will not be cancelled, but streamed. 2021-01-14 09:00:00 UTC 2021-01-14 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Version Control with Git - Advanced Topics

    15 January 2021

    Lausanne, Switzerland

    Elixir node event
    Version Control with Git - Advanced Topics https://tess.elixir-europe.org/events/version-control-with-git-advanced-topics This course will take place in Lausanne with rules complying to COVID situation (distances and hygiene), but in the event of new restrictions, the participants will be informed that it will not be cancelled, but streamed. 2021-01-15 09:00:00 UTC 2021-01-15 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Introduction to statistics with R

    8 - 11 February 2021

    Lausanne, Switzerland

    Elixir node event
    Introduction to statistics with R https://tess.elixir-europe.org/events/introduction-to-statistics-with-r This course will take place in Lausanne with rules complying to COVID situation (distances and hygiene). 2021-02-08 09:00:00 UTC 2021-02-11 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Transcriptomics Analysis: RNA-seq

    23 - 25 February 2021

    Lausanne, Switzerland

    Elixir node event
    Transcriptomics Analysis: RNA-seq https://tess.elixir-europe.org/events/transcriptomics-analysis-rna-seq-504f54cd-9f87-463a-9604-f1ecdf5a1c6c This course will take place in Lausanne with rules complying to COVID situation (distances and hygiene). 2021-02-23 09:00:00 UTC 2021-02-25 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Long-read and RNA

    11 - 12 March 2021

    Bern, Switzerland

    Elixir node event
    Long-read and RNA https://tess.elixir-europe.org/events/long-read-and-rna More information coming soon... 2021-03-11 09:00:00 UTC 2021-03-12 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Introduction to R Shiny

    29 March 2021

    Bern, Switzerland

    Elixir node event
    Introduction to R Shiny https://tess.elixir-europe.org/events/introduction-to-r-shiny-7c523dd5-326e-4c63-8885-097e76e33af5 Overview Shiny is an open-source R package that allows building interactive web applications from R, and without knowledge of web-development, enabling data scientists to make their data or analysis interactively explorable and accessible to 2021-03-29 09:00:00 UTC 2021-03-29 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • NGS - Genome variant analysis

    30 - 31 March 2021

    Bern, Switzerland

    Elixir node event
    NGS - Genome variant analysis https://tess.elixir-europe.org/events/ngs-genome-variant-analysis-65d385b7-2a1d-4b26-a539-5f7e71eacf04 This course will take place in Bern with rules complying to the COVID-19 situation (distance and hygiene). 2021-03-30 09:00:00 UTC 2021-03-31 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • First steps with R in Life Sciences

    15 - 16 April 2021

    Lausanne, Switzerland

    Elixir node event
    First steps with R in Life Sciences https://tess.elixir-europe.org/events/first-steps-with-r-in-life-sciences-207ad345-2097-436a-b1ad-35f807673310 Overview R is a complete, flexible and open source system for statistical analysis and graphics, which has become a tool of choice for biologists and biomedical scientists who need to analyse and visualise large amounts of data. 2021-04-15 09:00:00 UTC 2021-04-16 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Intermediate statistics: data analysis in practice

    21 - 22 April 2021

    Lausanne, Switzerland

    Elixir node event
    Intermediate statistics: data analysis in practice https://tess.elixir-europe.org/events/intermediate-statistics-data-analysis-in-practice This course will take place in Lausanne with rules complying to COVID situation (distances and hygiene). 2021-04-21 09:00:00 UTC 2021-04-22 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Galaxy introduction for life scientists

    28 April 2021

    Lausanne, Switzerland

    Galaxy introduction for life scientists https://tess.elixir-europe.org/events/galaxy-introduction-for-life-scientists-f44d2ef2-64d6-4aef-829c-749f6474e5db This course will take place in Lausanne with rules complying to COVID situation (distances and hygiene). 2021-04-28 09:00:00 UTC 2021-04-28 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • First Steps with UNIX in Life Sciences

    3 May 2021

    Bern, Switzerland

    Elixir node event
    First Steps with UNIX in Life Sciences https://tess.elixir-europe.org/events/first-steps-with-unix-in-life-sciences-c676cc79-09c9-4114-903f-4747ab562e6e This course will take place in Bern with rules complying to COVID situation (distances and hygiene). 2021-05-03 09:00:00 UTC 2021-05-03 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • First Steps with Python in Life Sciences

    10 - 12 May 2021

    Lausanne, Switzerland

    Elixir node event
    First Steps with Python in Life Sciences https://tess.elixir-europe.org/events/first-steps-with-python-in-life-sciences-2cd36cd5-4588-482e-a6e8-bf14002e8287 Overview Have you ever been stuck with a file format that doesn't precisely conform to your needs, found yourself doing annoyingly repetitive data manipulations, or struggled to efficiently manage and explore your data? Python to the rescue! 2021-05-10 09:00:00 UTC 2021-05-12 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Introduction to Machine Learning

    7 - 8 June 2021

    Lausanne, Switzerland

    Elixir node event
    Introduction to Machine Learning https://tess.elixir-europe.org/events/introduction-to-machine-learning-with-r-a58eebd8-9b7d-4828-937e-620dcfaa2e2e More information coming soon... 2021-06-07 09:00:00 UTC 2021-06-08 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Single-cell Transcriptomics

    15 - 17 June 2021

    Bern, Switzerland

    Elixir node event
    Single-cell Transcriptomics https://tess.elixir-europe.org/events/single-cell-transcriptomics-3ed8f722-6586-4194-baa4-334463d21f87 Overview In contrast to the Bulk RNA sequencing used to quantify the abundance of gene and transcript expression at a whole population level, single-cell RNA sequencing (scRNAseq) allows researchers to study gene expression profile at a single cell 2021-06-15 09:00:00 UTC 2021-06-17 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []

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