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  • World ADC

    24 - 26 October 2012

    San Francisco, United States of America

    World ADC https://tess.elixir-europe.org/events/world-adc 2012-10-24 09:00:00 UTC 2012-10-26 00:00:00 UTC Hanson Wade San Francisco Airport Marriott Waterfront, San Francisco, United States of America San Francisco Airport Marriott Waterfront San Francisco United States of America Medicine [] [] [] meetings_and_conferences [] []
  • World Genome Data Analysis Summit

    27 - 29 November 2012

    San Francisco, United States of America

    World Genome Data Analysis Summit https://tess.elixir-europe.org/events/world-genome-data-analysis-summit 2012-11-27 09:00:00 UTC 2012-11-29 00:00:00 UTC Hanson Wade San Francisco, United States of America San Francisco United States of America Genomics Bioinformatics [] [] [] meetings_and_conferences [] ISCBOtherEvents
  • Multiple Sequence Alignment with Jalview and Protein Structure and Function Modelling

    14 - 15 May 2018

    Liverpool, United Kingdom

    Elixir node event
    Multiple Sequence Alignment with Jalview and Protein Structure and Function Modelling https://tess.elixir-europe.org/events/multiple-sequence-alignment-with-jalview-and-protein-structure-and-function Date: Monday 14th to Tuesday 15th May 2018 Time: 9.00 to 17.00 Location: MSTC, Sherrington Building, University of Liverpool, L69 3BX Overview This two day hands-on training course is aimed at students and researchers who want to gain practical understanding of the tools and approaches for protein sequence, structure and function prediction and analysis. In day 1, participants will be introduced to Jalview - a free desktop application for the visualisation and comparative analysis of protein, DNA and RNA sequences. Jalview can integrate data from Ensembl, Uniprot, PDBe, Rfam and Pfam, and can access a range of tools for multiple sequence alignment, conservation analysis and secondary structure and disorder prediction, including the widely used JPred4. On the second day, participants will learn to use Jalview’s 3D structure visualisation capabilities in conjunction with UCSF Chimera, and take a whistle-stop tour of the methodologies and tools for prediction and analysis of Protein 3D structure and function. Participants are encouraged to bring their own protein analysis problems and time will be reserved at the end of day 2 for discussion. Register using the link on the Jalview website: http://www.jalview.org/training/training-courses/Multiple-Sequence-Alignment-with-Jalview-and-Protein-Structure-and Day 1: Multiple Sequence Alignment and Analysis with Jalview Workshop trainers: Dr Jim Procter and Dr Suzanne Duce 9 9.15 Introduction to the Workshop 9.15 10.30 Session 1.Loading sequences, structures and alignments with Jalview Coffee break 11 12.30 Session 2. Multiple alignment Creation and Alignment Reliability Lunch 1.30 3pm Session 3. Phylogenetic trees and subfamily analysis of Proteins and CDS Coffee break 3.30 5pm Session 4. Protein secondary structure and disorder prediction, and working with annotation Day 2: Protein Structure Analysis and Modelling Workshop trainers: Dr Jim Procter and Dr Dan Rigden 9 9.15 Introduction to Workshop Day 2 9.15 9.30 Introduction to Protein 3D Structure 9.30 10 Viewing and Comparing 3D structures with Jalview and UCSF Chimera 10 10.30 Mapping sequence conservation to Biological Assemblies with Jalview Coffee Break 11 12.30 Functional analysis of Protein Structures Lunch 1.30 2.30 Homology modelling and model quality evaluation 2.30 3.15 Ab initio models and searching for fold matches 3.15 3.30 Wrap up: Function Analysis and 3D models Coffee Break 4pm 5pm Analyse your own protein sequences and structures. 2018-05-14 09:00:00 UTC 2018-05-15 17:00:00 UTC Dr Jim Procter and Dr Dan Rigden MSTC, Sherrington Building, University of Liverpool, Liverpool, United Kingdom MSTC, Sherrington Building, University of Liverpool Liverpool Merseyside United Kingdom L69 3BX University of Liverpool Dr Jim Procter and Dr Suzanne Duce, School of Life Sciences, University of Dundee, Dundee University of Dundee PhD studentspostdoctoral researchersprinciple investigatorsLife Science Researchersbioinformaticians 45 workshops_and_courses registration_of_interest Jalviewmultiple sequence alignmentMSAprotein sequence protein structure protein predictionHomology modellingAb initio modelsChimerasubfamily analysisPhylogenetic treesProtein secondary structureUniversity of DundeeUniversity of Liverpool
  • WikiPathways Summit 2018

    8 - 10 October 2018

    San Francisco, United States of America

    Elixir node event
    WikiPathways Summit 2018 https://tess.elixir-europe.org/events/wikipathways-summit-2018 To celebrate 10 years of open science, the WikiPathways team is hosting a 3-day summit at Gladstone Institutes in San Francisco featuring seminars and hands-on workshops. Each day of the event is themed to serve the various communities of users and contributors working with biological pathways. Anyone interested in pathways is welcome to attend. No prior experience with WikiPathways is required. 2018-10-08 09:00:00 UTC 2018-10-10 17:00:00 UTC The WikiPathways Project 1650 Owens St, 1650, Owens Street, San Francisco, United States of America 1650 Owens St, 1650, Owens Street San Francisco San Francisco County United States of America Systems biology Metabolomics Gladstone InstitutesMaastricht University [] Researchersbiocuratorsbioinformaticians meetings_and_conferencesworkshops_and_courses [] Pathway analysisMetabolic pathwayBiological databases
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