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  • Trends in Biodiversity in Time and Space

    29 October - 23 November 2012

    Leiden, Netherlands

    Trends in Biodiversity in Time and Space https://tess.elixir-europe.org/events/trends-in-biodiversity-in-time-and-space 2012-10-29 00:00:00 UTC 2012-11-23 00:00:00 UTC Distributed European School of Taxonomy Leiden University, Leiden, Netherlands Leiden University Leiden Netherlands [] [] [] workshops_and_courses [] Taxonomy
  • Cybertaxonomy and biodiversity information with special emphasis on geospatial related data (Novice or Advanced Training)

    31 October 2012

    Leiden, Netherlands

    Cybertaxonomy and biodiversity information with special emphasis on geospatial related data (Novice or Advanced Training) https://tess.elixir-europe.org/events/cybertaxonomy-and-biodiversity-information-with-special-emphasis-on-geospatial-related-data-novice-or-advanced-training-f734d997-5355-45a6-a25c-caaf7220327b 2012-10-31 00:00:00 UTC 2012-10-31 00:00:00 UTC Distributed European School of Taxonomy Leiden, Netherlands Leiden Netherlands Bioinformatics [] [] [] workshops_and_courses [] TaxonomyBiodiversityInformation
  • Web-based Taxonomy and Biodiversity Information Processing

    1 November - 1 December 2012

    Leiden, Netherlands

    Web-based Taxonomy and Biodiversity Information Processing https://tess.elixir-europe.org/events/web-based-taxonomy-and-biodiversity-information-processing 2012-11-01 00:00:00 UTC 2012-12-01 00:00:00 UTC Distributed European School of Taxonomy ETI BioInformatics Center, Leiden, Netherlands ETI BioInformatics Center Leiden Netherlands Bioinformatics [] [] [] workshops_and_courses [] BiodiversityInformation
  • Elasmobranch teeth enameloid microstructure as a taxonomic criterion

    1 December 2012

    Copenhagen, Denmark

    Elasmobranch teeth enameloid microstructure as a taxonomic criterion https://tess.elixir-europe.org/events/elasmobranch-teeth-enameloid-microstructure-as-a-taxonomic-criterion 2012-12-01 00:00:00 UTC 2012-12-01 00:00:00 UTC Distributed European School of Taxonomy Natural History Museum of Denmark, Copenhagen, Denmark Natural History Museum of Denmark Copenhagen Denmark [] [] [] workshops_and_courses [] Taxonomy
  • Phylogenetic Systematics and Molecular Dating

    21 January - 1 February 2013

    Copenhagen, Denmark

    Phylogenetic Systematics and Molecular Dating https://tess.elixir-europe.org/events/phylogenetic-systematics-and-molecular-dating 2013-01-21 00:00:00 UTC 2013-02-01 00:00:00 UTC Distributed European School of Taxonomy University of Copenhagen, Copenhagen, Denmark University of Copenhagen Copenhagen Denmark [] [] [] workshops_and_courses [] phylogeneticsystematics
  • Automated Workflow Composition in the Life Sciences

    9 - 13 March 2020

    Leiden, Netherlands

    Automated Workflow Composition in the Life Sciences https://tess.elixir-europe.org/events/automated-workflow-composition-in-the-life-sciences In the age of computational science, researchers in the life sciences – just as in other domains – regularly face the need of composing several individual software tools into pipelines or workflows that perform the specific data analysis processes that they need in their research. For over 20 years now, dedicated scientific workflow management systems have been supporting scientists in this task, and they continue to gain popularity. In fact, recent years have seen significant progress in the functional annotation of bioinformatics software tools, as well as their virtualization, containerization and assembly into workflows for automatically executing the processes. At least since the rise of the Semantic Web in the early 2000s, also the idea of semantics-based automated composition of workflows has been around to simplify the work with scientific workflows further and free life science researchers from having to deal with the technicalities of software composition. This would not only save valuable research time, but also reduce errors, allow benchmarking of data analysis pipelines and enable new scientific findings by discovering workflows that researchers would not have thought of themselves. However, despite its obvious potential and appeal, the need for optimizing data analysis workflows, and despite different research groups working on the topic, automated workflow composition has not yet arrived in the daily practice of life science researchers. The reasons for this are manifold. Some are more practical (for example the lack of automatic composition tools in the commonly used software frameworks), others are of more fundamental nature (such as questions on specification languages, composition algorithms, formal semantics and workflows representations). On one important aspect, namely the semantic annotation of tools on a large scale, the life science community has made significant progress in the last years: The EDAM ontology provides a controlled vocabulary of bioinformatics operations, data types and formats, and the bio.tools registry has become a large collection of bioinformatics tools that are semantically annotated with terms from the EDAM ontology. As demonstrated in a recent Bioinformatics publication (https://academic.oup.com/bioinformatics/article/35/4/656/5060940), this forms a solid basis for performing automated workflow composition in the life sciences domain. Nevertheless, it is still a long way to its use in daily scientific practice. This workshop will bring together researchers and practitioners who have been working on different aspects related to automated workflow composition in the life sciences. These include life science researchers, tool providers, infrastructure developers, ontologists, algorithmics researchers and many more. They do not normally come together as a group at the regular scientific events, so a Lorentz workshop devoted to this topic provides a unique opportunity to join forces and together significantly advance the field. 2020-03-09 09:00:00 UTC 2020-03-13 17:00:00 UTC Jon Ison, Anna-Lena Lamprecht, Magnus Palmblad and Veit Schwämmle Lorentz Center Oort, Leiden, Netherlands Lorentz Center Oort Leiden Netherlands 2333 Omics Workflows Leiden University reinards@lorentzcenter.nl ELIXIRLorentz CenterLUMC software developers, bioinformaticiansbiocurators 50 workshops_and_courses [] []
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