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  • Biological Imaging Data Management for Life Scientists

    14 July 2016

    Cambridge, United Kingdom

    Elixir node event
    Biological Imaging Data Management for Life Scientists https://tess.elixir-europe.org/events/biological-imaging-data-management-for-life-scientists-eb567418-c2a4-45dc-8363-1778a4bc4b13 [The Open Microscopy Environment](https://www.openmicroscopy.org/) (OME) is an open-source software project that develops tools that enable access, analysis, visualization, sharing and publication of biological image data. OME has three components: * OME-TIFF, standardised file format and data model; * Bio-Formats, a software library for reading proprietary image file formats; and * OMERO, a software platform for image data management and analysis. In this one day course, we will present the OMERO platform, and show how to import, organise, view, search, annotate and publish imaging data. Additionally, we will briefly introduce how to use a variety of analysis tools with OMERO. This course is organized alongside a one day course on Biological Imaging Data Management for Facility Managers. More information on this event are available [here](http://www.training.cam.ac.uk/bioinformatics/event/1769270). This course will be delivered by members of the OMERO team. The OME project is supported by BBSRC and Wellcome Trust. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Biological%20imaging%20data%20management%20for%20life%20scientists_bioinfo-omerols_14.07.2016_1769278&CourseName=Biological%20imaging%20data%20management%20for%20life%20scientists&CourseDate=14.07.2016&CourseDuration=1&EventID=1769278).'' 2016-07-14 08:30:00 UTC 2016-07-14 16:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Data management Biological imaging Bioinformatics University of Cambridge Bioinformatics Training [] Anyone wanting to use OMERO to organizeviewannotate and publish imaging dataFacility Managers wanting to train usersGraduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Bioinformatics for core facility managers

    6 - 8 June 2017

    Cambridge, United Kingdom

    Elixir node event
    Bioinformatics for core facility managers https://tess.elixir-europe.org/events/bioinformatics-for-core-facility-managers Supported by Core Technologies for Life Sciences 2017-06-06 12:00:00 UTC 2017-06-08 16:45:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Charlotte Pearton [] Core Facility Managers 30 workshops_and_courses registration_of_interest HDRUK
  • Biological Imaging Data Management for Life Scientists

    7 December 2017

    Cambridge, United Kingdom

    Elixir node event
    Biological Imaging Data Management for Life Scientists https://tess.elixir-europe.org/events/biological-imaging-data-management-for-life-scientists [The Open Microscopy Environment](https://www.openmicroscopy.org/) (OME) is an open-source software project that develops tools that enable access, analysis, visualization, sharing and publication of biological image data. OME has three components: * OME-TIFF, standardised file format and data model; * Bio-Formats, a software library for reading proprietary image file formats; and * OMERO, a software platform for image data management and analysis. In this one day course, we will present the OMERO platform, and show how to import, organise, view, search, annotate and publish imaging data. Additionally, we will briefly introduce how to use a variety of processing tools with OMERO. This course is organized alongside a one day course on Biological Imaging Data Processing for Data Scientists. More information on this event are available [here](https://training.csx.cam.ac.uk/bioinformatics/event/2280783). This course will be delivered by members of the OMERO team. The OME project is supported by BBSRC and Wellcome Trust. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=2239247&course-title=Biological%20imaging%20data%20management%20for%20life%20scientists).'' 2017-12-07 09:30:00 UTC 2017-12-07 17:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Data management Biological imaging Bioinformatics University of Cambridge Bioinformatics Training [] Anyone wanting to use OMERO to organizeviewannotate and publish imaging dataFacility Managers wanting to train usersGraduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • First steps with R in Life Sciences

    19 - 20 April 2018

    Bern, Switzerland

    Elixir node event
    First steps with R in Life Sciences https://tess.elixir-europe.org/events/first-steps-with-r-in-life-sciences-9438ac46-684f-4653-bd28-f2c3525fd43f The course is full. Overview R is a complete, flexible and open source system for statistical analysis and graphics, which has become a tool of choice for biologists and biomedical scientists who need to analyse and visualise large amounts of data. 2018-04-19 09:00:00 UTC 2018-04-20 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • RNA-seq: From quality control to pathway analysis

    30 - 31 May 2018

    Bern, Switzerland

    Elixir node event
    RNA-seq: From quality control to pathway analysis https://tess.elixir-europe.org/events/rna-seq-from-quality-control-to-pathway-analysis This course is oversubscribed. Overview This course will present all the bioinformatics tools required to analyze RNA-seq gene expression data, from the raw data to the biological interpretation. 2018-05-30 09:00:00 UTC 2018-05-31 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Docker for reproducible computational research

    13 June 2018

    Bern, Switzerland

    Elixir node event
    Docker for reproducible computational research https://tess.elixir-europe.org/events/docker-for-reproducible-computational-research Overview Bioinformatics analysis usually involves a large number of software tools, reference data and pipelines used to elaborate the results. 2018-06-13 09:00:00 UTC 2018-06-13 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • De novo RNA-Seq assembly workshop

    25 - 26 June 2018

    Bern, Switzerland

    Elixir node event
    De novo RNA-Seq assembly workshop https://tess.elixir-europe.org/events/de-novo-rna-seq-assembly-workshop 2018-06-25 09:00:00 UTC 2018-06-26 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Single cell transcriptome workshop

    27 - 28 June 2018

    Bern, Switzerland

    Elixir node event
    Single cell transcriptome workshop https://tess.elixir-europe.org/events/single-cell-transcriptome-workshop This course is co-organised by the CUSO/StarOmics doctoral program. Priority is given to its members, but is open to everyone. 2018-06-27 09:00:00 UTC 2018-06-28 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • NGS bioinformatics quality control and variant annotation for cancer diagnosis

    4 September 2018

    Bern, Switzerland

    Elixir node event
    NGS bioinformatics quality control and variant annotation for cancer diagnosis https://tess.elixir-europe.org/events/ngs-bioinformatics-quality-control-and-variant-annotation-for-cancer-diagnosis Overview This course is organised by SIB Swiss Institute of Bioinformatics, in collaboration with the Clinical Pathology Division of the University Hospital of Geneva (HUG). 2018-09-04 09:00:00 UTC 2018-09-04 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • NGS - Quality control, Alignment, Visualisation

    2 - 3 October 2018

    Bern, Switzerland

    Elixir node event
    NGS - Quality control, Alignment, Visualisation https://tess.elixir-europe.org/events/ngs-quality-control-alignment-visualisation-9815e32a-c8bb-4b43-9e82-d2d075b97c2f Please note that this course is oversubscribed. Overview Usage of NGS is increasing in several biological fields due to a very rapid decrease in cost. 2018-10-02 09:00:00 UTC 2018-10-03 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Bioinformatics of long read sequencing

    8 - 9 November 2018

    Zurich, Switzerland

    Elixir node event
    Bioinformatics of long read sequencing https://tess.elixir-europe.org/events/bioinformatics-of-long-read-sequencing Please note that this course is over subscribed. 2018-11-08 09:00:00 UTC 2018-11-09 00:00:00 UTC SIB, Zurich, Switzerland SIB Zurich Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • SPHN Data Privacy and IT Security Training

    20 November 2018

    Zurich, Switzerland

    Elixir node event
    SPHN Data Privacy and IT Security Training https://tess.elixir-europe.org/events/sphn-data-privacy-and-it-security-training Overview Within the Swiss Personalized Health Network (SPHN) and related national initiatives researchers use patient data (i.e., confidential human data) in their research projects. 2018-11-20 09:00:00 UTC 2018-11-20 00:00:00 UTC SIB, Zurich, Switzerland SIB Zurich Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • High Performance Computing for genomic applications

    26 - 27 November 2018

    Zurich, Switzerland

    Elixir node event
    High Performance Computing for genomic applications https://tess.elixir-europe.org/events/high-performance-computing-for-genomic-applications-01f41c8d-a78f-4354-b37c-5a1ec697159b Overview The course "High Performance Computing for genomic applications" is organized for the D-BIOL researchers (including PhD students) by Scientific IT Services on 26-27 November 2018. 2018-11-26 09:00:00 UTC 2018-11-27 00:00:00 UTC SIB, Zurich, Switzerland SIB Zurich Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Single-cell RNA-Seq Analysis

    28 - 30 November 2018

    Bern, Switzerland

    Elixir node event
    Single-cell RNA-Seq Analysis https://tess.elixir-europe.org/events/single-cell-rna-seq-analysis Please note that this course is over subscribed, and the waiting list is already too long. We are not accepting applications any more. 2018-11-28 09:00:00 UTC 2018-11-30 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • RNA-seq: From quality control to pathway analysis

    21 - 22 January 2019

    Bern, Switzerland

    Elixir node event
    RNA-seq: From quality control to pathway analysis https://tess.elixir-europe.org/events/rna-seq-from-quality-control-to-pathway-analysis-1c7c32d8-e2ef-4e27-b18e-3eeb13f9ef61 Please note that this course is oversubscribed with a long waiting list. Overview This course will present all the bioinformatics tools required to analyze RNA-seq gene expression data, from the raw data to the biological interpretation. 2019-01-21 09:00:00 UTC 2019-01-22 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Introduction to statistics

    22 - 25 January 2019

    Zurich, Switzerland

    Elixir node event
    Introduction to statistics https://tess.elixir-europe.org/events/introduction-to-statistics-ffd2c538-293c-4e8d-87c5-f3e6801a564e Please note that this course is full. Overview This course is designed to provide researchers in biomedical sciences with experience in the application of basic statistical analysis techniques to a variety of biological problems. 2019-01-22 09:00:00 UTC 2019-01-25 00:00:00 UTC SIB, Zurich, Switzerland SIB Zurich Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • R-packaging

    5 February 2019

    Zurich, Switzerland

    Elixir node event
    R-packaging https://tess.elixir-europe.org/events/r-packaging-7d99e72f-ed13-45f7-807c-8903907185c0 This course is full. Overview In this course, R programmers will learn how to create R packages, the best way to make R scripts reusable. Participants will learn how to identify and create clear, clean and usable packages in R. 2019-02-05 09:00:00 UTC 2019-02-05 00:00:00 UTC SIB, Zurich, Switzerland SIB Zurich Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Workshop on Computational Biology at biology'19

    6 February 2019

    Zurich, Switzerland

    Elixir node event
    Workshop on Computational Biology at biology'19 https://tess.elixir-europe.org/events/workshop-on-computational-biology-at-biology-19 Overview SIB is co-organizing a workshop on computational biology on 6 Feb 2019 in Zurich, as a satellite event to Biology 2019, the annual Swiss conference on ecology, evolution, systematics and conservation. 2019-02-06 09:00:00 UTC 2019-02-06 00:00:00 UTC SIB, Zurich, Switzerland SIB Zurich Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • NGS - Quality control, Alignment, Visualisation

    27 February - 1 March 2019

    Bern, Switzerland

    Elixir node event
    NGS - Quality control, Alignment, Visualisation https://tess.elixir-europe.org/events/ngs-quality-control-alignment-visualisation-d26251dc-323a-4f69-a39c-f893e90527eb This course is over subscribed. You can still add your name to the waiting list by applying using the button at the bottom of this page. You will only be contacted if a place becomes available. 2019-02-27 09:00:00 UTC 2019-03-01 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Python for Life Scientists

    4 - 6 March 2019

    Bern, Switzerland

    Elixir node event
    Python for Life Scientists https://tess.elixir-europe.org/events/python-for-life-scientists-78a0a484-9179-42c1-8ff3-7da98c61d215 Overview Python is an open-source and general-purpose scripting language which runs on all major operating systems. 2019-03-04 09:00:00 UTC 2019-03-06 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Python for Life Scientists

    4 - 6 March 2019

    Bern, Switzerland

    Elixir node event
    Python for Life Scientists https://tess.elixir-europe.org/events/python-for-life-scientists-5ee8b76f-96e1-4f3a-a565-5e3307dcb88e We are sorry but this course is oversubscribed, with a long waiting list. The next version of this course will take place in November. Keep an eye in our distribution list (sign in here) for the announcement. 2019-03-04 09:00:00 UTC 2019-03-06 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • NGS - Genome variant analysis

    29 - 30 April 2019

    Bern, Switzerland

    Elixir node event
    NGS - Genome variant analysis https://tess.elixir-europe.org/events/ngs-genome-variant-analysis-61e3f31b-dcd2-48bf-b446-9a115382b002 This course is over subscribed. You can still add your name to the waiting list by applying using the button at the bottom of this page. You will only be contacted if a place becomes available. 2019-04-29 09:00:00 UTC 2019-04-30 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Introduction to R Shiny

    6 May 2019

    Zurich, Switzerland

    Elixir node event
    Introduction to R Shiny https://tess.elixir-europe.org/events/introduction-to-r-shiny This course is over subscribed. You can still add your name to the waiting list by applying using the button at the bottom of this page. You will only be contacted if a place becomes available. 2019-05-06 09:00:00 UTC 2019-05-06 00:00:00 UTC SIB, Zurich, Switzerland SIB Zurich Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Docker for reproducible computational research

    13 May 2019

    Bern, Switzerland

    Elixir node event
    Docker for reproducible computational research https://tess.elixir-europe.org/events/docker-for-reproducible-computational-research-4fbe7a5a-06bb-4c5f-8ae1-4fed251567d8 Overview Bioinformatics analysis usually involves a large number of software tools, reference data and pipelines used to elaborate the results. 2019-05-13 09:00:00 UTC 2019-05-13 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • NGS - Quality control, Alignment, Visualisation

    12 - 14 June 2019

    Bern, Switzerland

    Elixir node event
    NGS - Quality control, Alignment, Visualisation https://tess.elixir-europe.org/events/ngs-quality-control-alignment-visualisation-ae907af5-87b3-4a91-a5d2-754012a06b7e Overview Usage of NGS is increasing in several biological fields due to a very rapid decrease in cost. However, it often results in hundreds of Gbs of data making the downstream analysis very challenging and requires bioinformatics skills. 2019-06-12 09:00:00 UTC 2019-06-14 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • ELIXIR-SIB Data Carpentry with R - Genomics curriculum

    1 - 2 July 2019

    Zurich, Switzerland

    Elixir node event
    ELIXIR-SIB Data Carpentry with R - Genomics curriculum https://tess.elixir-europe.org/events/elixir-sib-data-carpentry-with-r We are sorry but this course is oversubscribed, with a long waiting list. Keep an eye in our distribution list (sign in here) for the announcements of future courses. 2019-07-01 09:00:00 UTC 2019-07-02 00:00:00 UTC SIB, Zurich, Switzerland SIB Zurich Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Introduction to RNA-Seq: From quality control to pathway analysis

    23 - 24 September 2019

    Bern, Switzerland

    Elixir node event
    Introduction to RNA-Seq: From quality control to pathway analysis https://tess.elixir-europe.org/events/rna-seq-from-quality-control-to-pathway-analysis-8a09dd6b-98c7-41cd-8be2-0efc7118f049 Please note that this course is oversubscribed with a long waiting list. Those on the waiting list will only be contacted in the case there is a cancellation. 2019-09-23 09:00:00 UTC 2019-09-24 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Good practice in high-throughput experiments

    30 September - 1 October 2019

    Zurich, Switzerland

    Elixir node event
    Good practice in high-throughput experiments https://tess.elixir-europe.org/events/good-practice-in-high-throughput-experiments Overview This course offers an overview of good practice in high-throughput experiments (e.g. next-generation sequencing or compound screening). Particularly we focus on pitfalls in the design of projects (e.g. 2019-09-30 09:00:00 UTC 2019-10-01 00:00:00 UTC SIB, Zurich, Switzerland SIB Zurich Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • NGS bioinformatics quality control and variant annotation for cancer diagnosis

    12 November 2019

    Bern, Switzerland

    Elixir node event
    NGS bioinformatics quality control and variant annotation for cancer diagnosis https://tess.elixir-europe.org/events/ngs-bioinformatics-quality-control-and-variant-annotation-for-cancer-diagnosis-7036fccb-a8a7-45bc-84cd-ee3593c3e85b Overview This course is organised by SIB Swiss Institute of Bioinformatics, in collaboration with the Clinical Pathology Division of the University Hospital of Geneva (HUG). 2019-11-12 09:00:00 UTC 2019-11-12 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • NGS - Single-cell RNA-Seq Analysis

    28 - 29 November 2019

    Bern, Switzerland

    Elixir node event
    NGS - Single-cell RNA-Seq Analysis https://tess.elixir-europe.org/events/single-cell-rna-seq-analysis-daefd42f-71d5-4c9e-bd4a-1e897d3198a7 We are sorry but this course is oversubscribed, with a long waiting list. The next version of this course will take place in 2020. Keep an eye in our distribution list (sign in here) for the announcement. 2019-11-28 09:00:00 UTC 2019-11-29 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
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