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  • Introduction to Next Generation Sequencing Bioinformatics Workshop

    31 March 2017

    Leuven, Belgium

    Elixir node event
    Introduction to Next Generation Sequencing Bioinformatics Workshop https://tess.elixir-europe.org/events/introduction-to-next-generation-sequencing-bioinformatics-workshop Introduction to Next Generation Sequencing Bioinformatics Workshop MARCH31, 2017 (08:30-17:00) Lokaal H04.212, ON2, Campus Gasthuisberg, KU Leuven, Leuven Preliminary Program 08:30 – 9:00 - Welcome coffee 09:00 – 09:05 – Welcome by Prof. Joris Vermeesch 09:05 - 10:00 - Overview of NGS sequencing methods and technologies Session lead: Jeroen Van Houdt - Genomics Core Leuven 10:00 - 11:00 – Understanding NGS raw data: Fastq format, quality checking, trimming, adapter clipping Session lead: Koen Herten - Genomics Core Leuven 11:00 – 11:30 – Coffee break 11:30 – 12:30 – Read mapping and alignment: SAM format, alignment tools, visualization on IGV Session lead: Koen Herten - Genomics Core Leuven 12:30 – 13:30 – Lunch 13:30 – 15:00 – Variant calling: tools, GATK, quality scores, baserecalibration, VCF files Session lead: Erika Souche & Luc Dehaspe - Genomics Core Leuven 15:00 – 15:30 – Coffee break 15:30 – 17:00 – RNA-Seq data: Differential expression principles, counting, DE table interpretation Session lead: Alvaro Cortés Calabuig – Genomics Core Leuven Places are limited and are assigned on a first-come first-serve policy. The workshop is free of charge for students and members of academic institutions in Belgium. The cost for members of non-academic institutions (VIB, IMEC, pharma, etc.) is 100€. Sandwiches will be offered at lunch time. Late cancellations are subject to an administrative fee of 50€. Participants are required to bring their own laptops. For inquiries, please send an email to alvaro.cortes@uzleuven.be. 2017-03-31 08:30:00 UTC 2017-03-31 17:00:00 UTC Genomics Core KU Leuven/UZ Leuven Herestraat 49, Rooml H04.212, ON2, Campus Gasthuisberg, KU Leuven, Leuven, Leuven, Belgium Herestraat 49, Rooml H04.212, ON2, Campus Gasthuisberg, KU Leuven, Leuven Leuven Vlaams-Brabant Belgium 3000 High-throughput sequencing KU Leuven alvaro.cortes@uzleuven.be [] Post-DocsPhD 25 workshops_and_courses first_come_first_served []
  • Bioinformatics for core facility managers

    6 - 8 June 2017

    Cambridge, United Kingdom

    Elixir node event
    Bioinformatics for core facility managers https://tess.elixir-europe.org/events/bioinformatics-for-core-facility-managers Supported by Core Technologies for Life Sciences 2017-06-06 12:00:00 UTC 2017-06-08 16:45:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Charlotte Pearton [] Core Facility Managers 30 workshops_and_courses registration_of_interest HDRUK
  • Applied Bioinformatics in Life Sciences (2nd edition)

    8 - 9 March 2018

    Leuven, Belgium

    Elixir node event
    Applied Bioinformatics in Life Sciences (2nd edition) https://tess.elixir-europe.org/events/applied-bioinformatics-in-life-sciences-2nd-edition Registration is now open! As an integral part of biological research, the field of bioinformatics brings forth innovative computational approaches leading to high-impact results in an increasingly data-dense environment. After a sold-out first edition in March 2016, this second edition will feature recent developments in bioinformatics research, and highlight the power of computational biology in the fields of medical, agricultural, and biotechnology research. Renowned speakers will present how bioinformatics is applied broadly in life sciences, and shed light on the future perspectives of their research. During four plenary sessions, the speakers will focus on the topics: Medical Integrative Omics Proteomics and Metabolomics Structural Bioinformatics Systems Biology ​Conference attendees will have ample networking opportunities besides an exciting scientific program. Find out more about the first edition 'ABLS' Poster information: Format: A0 (841 x 1189 mm / 33.1 x 46.8 in), portrait orientation 2018-03-08 08:45:00 UTC 2018-03-09 17:30:00 UTC VIB Conference series Iers college, 1, Janseniusstraat, Leuven, Belgium Iers college, 1, Janseniusstraat Leuven Vlaams-Brabant Belgium 3000 VIB Practical questions: VIB conferences team +32 9 244 66 11 conferences@vib.be [] PhDAcademicsIndustry 250 meetings_and_conferences first_come_first_served ProteomicsMetabolomicsbioinformaticsSystems biologyProteinsEpigenomicscellular signalingMass spectrometry datamass spectrometry
  • First steps with R in Life Sciences

    19 - 20 April 2018

    Bern, Switzerland

    Elixir node event
    First steps with R in Life Sciences https://tess.elixir-europe.org/events/first-steps-with-r-in-life-sciences-9438ac46-684f-4653-bd28-f2c3525fd43f The course is full. Overview R is a complete, flexible and open source system for statistical analysis and graphics, which has become a tool of choice for biologists and biomedical scientists who need to analyse and visualise large amounts of data. 2018-04-19 09:00:00 UTC 2018-04-20 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • RNA-seq: From quality control to pathway analysis

    30 - 31 May 2018

    Bern, Switzerland

    Elixir node event
    RNA-seq: From quality control to pathway analysis https://tess.elixir-europe.org/events/rna-seq-from-quality-control-to-pathway-analysis This course is oversubscribed. Overview This course will present all the bioinformatics tools required to analyze RNA-seq gene expression data, from the raw data to the biological interpretation. 2018-05-30 09:00:00 UTC 2018-05-31 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Docker for reproducible computational research

    13 June 2018

    Bern, Switzerland

    Elixir node event
    Docker for reproducible computational research https://tess.elixir-europe.org/events/docker-for-reproducible-computational-research Overview Bioinformatics analysis usually involves a large number of software tools, reference data and pipelines used to elaborate the results. 2018-06-13 09:00:00 UTC 2018-06-13 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • De novo RNA-Seq assembly workshop

    25 - 26 June 2018

    Bern, Switzerland

    Elixir node event
    De novo RNA-Seq assembly workshop https://tess.elixir-europe.org/events/de-novo-rna-seq-assembly-workshop 2018-06-25 09:00:00 UTC 2018-06-26 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Single cell transcriptome workshop

    27 - 28 June 2018

    Bern, Switzerland

    Elixir node event
    Single cell transcriptome workshop https://tess.elixir-europe.org/events/single-cell-transcriptome-workshop This course is co-organised by the CUSO/StarOmics doctoral program. Priority is given to its members, but is open to everyone. 2018-06-27 09:00:00 UTC 2018-06-28 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • NGS bioinformatics quality control and variant annotation for cancer diagnosis

    4 September 2018

    Bern, Switzerland

    Elixir node event
    NGS bioinformatics quality control and variant annotation for cancer diagnosis https://tess.elixir-europe.org/events/ngs-bioinformatics-quality-control-and-variant-annotation-for-cancer-diagnosis Overview This course is organised by SIB Swiss Institute of Bioinformatics, in collaboration with the Clinical Pathology Division of the University Hospital of Geneva (HUG). 2018-09-04 09:00:00 UTC 2018-09-04 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • NGS - Quality control, Alignment, Visualisation

    2 - 3 October 2018

    Bern, Switzerland

    Elixir node event
    NGS - Quality control, Alignment, Visualisation https://tess.elixir-europe.org/events/ngs-quality-control-alignment-visualisation-9815e32a-c8bb-4b43-9e82-d2d075b97c2f Please note that this course is oversubscribed. Overview Usage of NGS is increasing in several biological fields due to a very rapid decrease in cost. 2018-10-02 09:00:00 UTC 2018-10-03 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Metabolism in Cancer and Stromal Cells (2nd edition)

    26 - 27 November 2018

    Leuven, Belgium

    Elixir node event
    Metabolism in Cancer and Stromal Cells (2nd edition) https://tess.elixir-europe.org/events/metabolism-in-cancer-and-stromal-cells-2nd-edition After a successful first edition of the VIB Conference “Metabolism in cancer and stromal cells” in September 2015, we are pleased to announce the second edition that will take place in the beautiful and historic city of Leuven. During this international Conference we will focus on how cancer and stromal cells metabolically communicate and how their specific metabolism impacts disease development and progression. These cellular metabolism insights will offer novel therapeutic opportunities for malignant, metabolic, or inflammatory disease. In addition, also the impact of ‘omics’ technologies to study cellular metabolism will be highlighted during the meeting. This conference will bring together internationally renowned experts who will showcase their findings on cell-type specific metabolism in cancer and beyond. By bringing together experts from different disciplines, we aim to provide a unique platform of interactions and to create a vibrant environment for discussions on novel concepts and recent technological developments. In addition to the scientific program with plenary talks and poster sessions, there will be ample opportunities to network during the breaks, reception and conference dinner. Poster information: Format: A0 (841 x 1189 mm / 33.1 x 46.8 in), portrait orientation EARLY BIRD DEADLINE: OCT 15 ABSTRACT SUBMISSION DEADLINE: SEP 24 2018-11-26 09:00:00 UTC 2018-11-27 17:00:00 UTC VIB Conference Series Naamsestraat 22, 3000 Leuven, Leuven, Belgium Naamsestraat 22, 3000 Leuven Leuven Vlaams-Brabant Belgium 3000 VIB VIB Conferences +32 9 244 66 11 conferences@vib.be [] PhDAcademics meetings_and_conferences first_come_first_served Metabolism of Endothelial CellsMetabolism of Immune CellsMetabolism of Cancer CellsMetabolism of Cancer-Associated Fibroblasts
  • Single-cell RNA-Seq Analysis

    28 - 30 November 2018

    Bern, Switzerland

    Elixir node event
    Single-cell RNA-Seq Analysis https://tess.elixir-europe.org/events/single-cell-rna-seq-analysis Please note that this course is over subscribed, and the waiting list is already too long. We are not accepting applications any more. 2018-11-28 09:00:00 UTC 2018-11-30 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • RNA-seq: From quality control to pathway analysis

    21 - 22 January 2019

    Bern, Switzerland

    Elixir node event
    RNA-seq: From quality control to pathway analysis https://tess.elixir-europe.org/events/rna-seq-from-quality-control-to-pathway-analysis-1c7c32d8-e2ef-4e27-b18e-3eeb13f9ef61 Please note that this course is oversubscribed with a long waiting list. Overview This course will present all the bioinformatics tools required to analyze RNA-seq gene expression data, from the raw data to the biological interpretation. 2019-01-21 09:00:00 UTC 2019-01-22 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • NGS - Quality control, Alignment, Visualisation

    27 February - 1 March 2019

    Bern, Switzerland

    Elixir node event
    NGS - Quality control, Alignment, Visualisation https://tess.elixir-europe.org/events/ngs-quality-control-alignment-visualisation-d26251dc-323a-4f69-a39c-f893e90527eb This course is over subscribed. You can still add your name to the waiting list by applying using the button at the bottom of this page. You will only be contacted if a place becomes available. 2019-02-27 09:00:00 UTC 2019-03-01 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Python for Life Scientists

    4 - 6 March 2019

    Bern, Switzerland

    Elixir node event
    Python for Life Scientists https://tess.elixir-europe.org/events/python-for-life-scientists-78a0a484-9179-42c1-8ff3-7da98c61d215 Overview Python is an open-source and general-purpose scripting language which runs on all major operating systems. 2019-03-04 09:00:00 UTC 2019-03-06 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Python for Life Scientists

    4 - 6 March 2019

    Bern, Switzerland

    Elixir node event
    Python for Life Scientists https://tess.elixir-europe.org/events/python-for-life-scientists-5ee8b76f-96e1-4f3a-a565-5e3307dcb88e We are sorry but this course is oversubscribed, with a long waiting list. The next version of this course will take place in November. Keep an eye in our distribution list (sign in here) for the announcement. 2019-03-04 09:00:00 UTC 2019-03-06 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • NGS - Genome variant analysis

    29 - 30 April 2019

    Bern, Switzerland

    Elixir node event
    NGS - Genome variant analysis https://tess.elixir-europe.org/events/ngs-genome-variant-analysis-61e3f31b-dcd2-48bf-b446-9a115382b002 This course is over subscribed. You can still add your name to the waiting list by applying using the button at the bottom of this page. You will only be contacted if a place becomes available. 2019-04-29 09:00:00 UTC 2019-04-30 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Docker for reproducible computational research

    13 May 2019

    Bern, Switzerland

    Elixir node event
    Docker for reproducible computational research https://tess.elixir-europe.org/events/docker-for-reproducible-computational-research-4fbe7a5a-06bb-4c5f-8ae1-4fed251567d8 Overview Bioinformatics analysis usually involves a large number of software tools, reference data and pipelines used to elaborate the results. 2019-05-13 09:00:00 UTC 2019-05-13 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • NGS - Quality control, Alignment, Visualisation

    12 - 14 June 2019

    Bern, Switzerland

    Elixir node event
    NGS - Quality control, Alignment, Visualisation https://tess.elixir-europe.org/events/ngs-quality-control-alignment-visualisation-ae907af5-87b3-4a91-a5d2-754012a06b7e Overview Usage of NGS is increasing in several biological fields due to a very rapid decrease in cost. However, it often results in hundreds of Gbs of data making the downstream analysis very challenging and requires bioinformatics skills. 2019-06-12 09:00:00 UTC 2019-06-14 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Introduction to RNA-Seq: From quality control to pathway analysis

    23 - 24 September 2019

    Bern, Switzerland

    Elixir node event
    Introduction to RNA-Seq: From quality control to pathway analysis https://tess.elixir-europe.org/events/rna-seq-from-quality-control-to-pathway-analysis-8a09dd6b-98c7-41cd-8be2-0efc7118f049 Please note that this course is oversubscribed with a long waiting list. Those on the waiting list will only be contacted in the case there is a cancellation. 2019-09-23 09:00:00 UTC 2019-09-24 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • NGS bioinformatics quality control and variant annotation for cancer diagnosis

    12 November 2019

    Bern, Switzerland

    Elixir node event
    NGS bioinformatics quality control and variant annotation for cancer diagnosis https://tess.elixir-europe.org/events/ngs-bioinformatics-quality-control-and-variant-annotation-for-cancer-diagnosis-7036fccb-a8a7-45bc-84cd-ee3593c3e85b Overview This course is organised by SIB Swiss Institute of Bioinformatics, in collaboration with the Clinical Pathology Division of the University Hospital of Geneva (HUG). 2019-11-12 09:00:00 UTC 2019-11-12 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • NGS - Single-cell RNA-Seq Analysis

    28 - 29 November 2019

    Bern, Switzerland

    Elixir node event
    NGS - Single-cell RNA-Seq Analysis https://tess.elixir-europe.org/events/single-cell-rna-seq-analysis-daefd42f-71d5-4c9e-bd4a-1e897d3198a7 Overview In contrast to the Bulk RNA sequencing used to quantify the abundance of gene and transcript expression at a whole population level, single-cell RNA sequencing (scRNAseq) allows researchers to study gene expression profile at a single cell 2019-11-28 09:00:00 UTC 2019-11-29 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
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