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  • PA11 Pathway Analysis and Modeling of Biological Networks

    19 - 20 October 2011

    Oeiras, Portugal

    PA11 Pathway Analysis and Modeling of Biological Networks https://tess.elixir-europe.org/events/pa11-pathway-analysis-and-modeling-of-biological-networks 2011-10-19 09:00:00 UTC 2011-10-20 00:00:00 UTC Instituto Gulbenkian de Ciência GTPB - Bioinformatics Training Room, Oeiras, Portugal GTPB - Bioinformatics Training Room Oeiras Portugal Bioinformatics [] [] [] workshops_and_courses [] []
  • The international forum on Pathway Analysis in Proteomics

    21 - 22 October 2011

    Oeiras, Portugal

    The international forum on Pathway Analysis in Proteomics https://tess.elixir-europe.org/events/the-international-forum-on-pathway-analysis-in-proteomics 2011-10-21 09:00:00 UTC 2011-10-22 00:00:00 UTC Instituto Gulbenkian de Ciência GTPB - Bioinformatics Training Room, Oeiras, Portugal GTPB - Bioinformatics Training Room Oeiras Portugal Systems biology Proteomics Bioinformatics [] [] [] workshops_and_courses [] []
  • BFB11 Biostatistical Foundations in Bioinformatics

    24 - 28 October 2011

    Oeiras, Portugal

    BFB11 Biostatistical Foundations in Bioinformatics https://tess.elixir-europe.org/events/bfb11-biostatistical-foundations-in-bioinformatics 2011-10-24 09:00:00 UTC 2011-10-28 00:00:00 UTC Instituto Gulbenkian de Ciência GTPB - Bioinformatics Training Room, Oeiras, Portugal GTPB - Bioinformatics Training Room Oeiras Portugal Bioinformatics [] [] [] workshops_and_courses [] []
  • BIG11 Bioinformatics for Integrative Genomics

    7 - 9 November 2011

    Oeiras, Portugal

    BIG11 Bioinformatics for Integrative Genomics https://tess.elixir-europe.org/events/big11-bioinformatics-for-integrative-genomics 2011-11-07 09:00:00 UTC 2011-11-09 00:00:00 UTC Instituto Gulbenkian de Ciência GTPB - Bioinformatics Training Room, Oeiras, Portugal GTPB - Bioinformatics Training Room Oeiras Portugal Bioinformatics [] [] [] workshops_and_courses [] []
  • IB11A Introductory Bioinformatics 2nd Course

    11 - 15 December 2011

    Oeiras, Portugal

    IB11A Introductory Bioinformatics 2nd Course https://tess.elixir-europe.org/events/ib11a-introductory-bioinformatics-2nd-course 2011-12-11 23:00:00 UTC 2011-12-15 23:00:00 UTC Instituto Gulbenkian de Ciência GTPB - Bioinformatics Training Room, Oeiras, Portugal GTPB - Bioinformatics Training Room Oeiras Portugal Bioinformatics [] [] [] workshops_and_courses [] []
  • XI. International Tinnitus Seminar

    21 - 24 May 2014

    Berlin, Germany

    XI. International Tinnitus Seminar https://tess.elixir-europe.org/events/xi-international-tinnitus-seminar 2014-05-21 01:00:00 UTC 2014-05-24 01:00:00 UTC Charité University Hospital Berlin, Germany Berlin Germany Medicine [] [] [] meetings_and_conferences [] Otorhinolaryngology
  • International Winter School on Big Data

    26 - 30 January 2015

    Tarragona, Spain

    International Winter School on Big Data https://tess.elixir-europe.org/events/international-winter-school-on-big-data 2015-01-26 00:00:00 UTC 2015-01-30 00:00:00 UTC Rovira i Virgili University Tarragona, Spain Tarragona Spain Bioinformatics [] [] [] workshops_and_courses [] ISCBOtherEvents
  • PM16 Precision medicine

    27 - 30 September 2016

    Oeiras, Portugal

    PM16 Precision medicine https://tess.elixir-europe.org/events/pm16-precision-medicine The implementation of cancer genomics into the clinic is becoming a reality. Personalized medicine or Precision medicine as other authors refers, uses molecular data of a specific patient to guide clinical decisions such as prevention, diagnosis and treatment. This will revolutionize healthcare and will play a dominant role in the future of cancer therapy. Bioinformatics analyses are essential to identify patients who will benefit from treatment based on their molecular profile, and to tailor chemotherapeutic regimens accordingly. The aim of the course is to present a complete computational pipeline for the analysis and interpretation of Next-Generation Sequencing (NGS) data such as exome sequencing or targeted panels that are commonly used in the clinic. We will address the implementation of large-scale genomic sequencing in clinical practice and the recently developed computational strategies for the analysis of NGS data with a particular emphasis on the interpretation of the results, selection of biomarkers of drug response and afford opportunities to match therapies with the characteristics of the individual patient's tumour. Exercises and case studies focused on cancer will be used to illustrate the principles of how genetics influence led to refining diagnoses and personalized treatment of cancer disease. 2016-09-27 09:00:00 UTC 2016-09-30 00:00:00 UTC Instituto Gulbenkian de Ciência Instituto Gulbenkian de Ciência, Oeiras, Portugal Instituto Gulbenkian de Ciência Oeiras Portugal 901 [] [] [] workshops_and_courses [] PersonalizedMedicine
  • 3DAROC16

    10 - 14 October 2016

    Oeiras, Portugal

    3DAROC16 https://tess.elixir-europe.org/events/3daroc16 3C-based methods, such as Hi-C, produce a huge amount of raw data as pairs of DNA reads that are in close spatial proximity in the cell nucleus. Overall, those interaction matrices have been used to study how the genome folds within the nucleus, which is one of the most fascinating problems in modern biology. The rigorous analysis of those paired-reads using computational tools has been essential to fully exploit the experimental technique, and to study how the genome is folded in the space. Currently, there is a clear expansion on the wealth of data on genome structure with the availability of many datasets of Hi-C experiments down to 1Kb resolution (see for example: http://hic.umassmed.edu/welcome/welcome.php ; http://promoter.bx.psu.edu/hi-c/view.php or http://www.aidenlab.org/data.html ). In this course, participants will learn to use TADbit, a software designed and developed to manage all dimensionalities of the Hi-C data: 1D - Map paired-end sequences to generate Hi-C interaction matrices 2D - Normalize matrices and identify constitutive domains (TADs, compartments) 3D - Generate populations of structures which satisfy the Hi-C interaction matrices 4D - Compare samples at different time points Participants can bring- specific biological questions and/or their own 3C-based data to analyze during the course. At the end of the course, participants will be familiar with the TADbit software and will be able to fully analyze Hi-C data. Note: Although the TADbit software is central in this course, alternative software will be discussed for each part of the analysis. 2016-10-10 09:00:00 UTC 2016-10-14 00:00:00 UTC Instituto Gulbenkian de Ciência Instituto Gulbenkian de Ciência, Oeiras, Portugal Instituto Gulbenkian de Ciência Oeiras Portugal 901 Sequencing [] [] [] workshops_and_courses [] Hi-Cdata
  • AET16 Applied Evolutionary Theory

    7 - 11 November 2016

    Oeiras, Portugal

    AET16 Applied Evolutionary Theory https://tess.elixir-europe.org/events/aet16-applied-evolutionary-theory For many of its history, our knowledge of evolution has been based heavily on theoretical models and hypotheses. In the age of novel experimental and technological approaches, we are now increasingly able to evaluate this theory; however, the basics of how and why to develop and analyze a simple model are often forgotten in the process of NGS analysis. This course aims at training evolutionary biologists in classical modeling and teach them ways to approach their own research questions through evolutionary theory. Primarily through interactive hands-on sessions, complemented by an introduction to the cornerstones of modeling and its application to data analysis, this course will familiarize the participants with ways of approaching a research question with a simple model, and different strategies at gaining insight from the model. In groups of two, course participants will develop and analyze their own toy model in the course and present their findings to the group on the last day. Topics that will be covered in the course include the following: Why and how are models useful? How to write down/develop a model How simple/complicated should a model be? Which modeling approach/programming language should I use for my question? How to nail down a question with a model Extracting results from an equation/simulation How to evaluate a model using empirical data Participants can use their preferred programming language during the hands-on sessions, and free access to Wolfram Mathematica will be provided. The instructors have modeling experience using Mathematica, R, Python, and C++. 2016-11-07 09:00:00 UTC 2016-11-11 00:00:00 UTC Instituto Gulbenkian de Ciência Instituto Gulbenkian de Ciência, Oeiras, Portugal Instituto Gulbenkian de Ciência Oeiras Portugal 901 Computational biology Evolutionary biology [] [] [] workshops_and_courses [] Evolutionmodelling
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