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132 events found

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  • RNA-Seq analysis using Galaxy

    13 - 14 September 2017

    Brisbane, Australia

    RNA-Seq analysis using Galaxy https://tess.elixir-europe.org/events/rna-seq-analysis-using-galaxy-e3c1665a-493a-4be8-8fe3-36d3acc0333d 2017-09-13 09:00:00 UTC 2017-09-14 12:30:00 UTC QFAB Bioinformatics Room 3.141, Queensland Bioscience Precinct, The University of Queensland, Brisbane, Australia Room 3.141, Queensland Bioscience Precinct, The University of Queensland Brisbane Australia University of Queensland [] [] workshops_and_courses [] []
  • ELIXIR biocontainers hackathon

    9 - 11 October 2017

    Paris, France

    ELIXIR biocontainers hackathon https://tess.elixir-europe.org/events/elixir-biocontainers-hackathon The “ELIXIR Software Deployment Group” is one of the six working groups of the ELIXIR tools platform. It has been recently formed to support bioinformatics software deployment efforts including packages and containers. At the moment this group is sustained by ELIXIR Nodes sharing a common interest to work together on a harmonised strategy. The activities of this group are extremely relevant to other two groups within ELIXIR Tools platforms: “Workflows & workbenches” and “Software development best practices” because it represents the starting point for the development of reproducible pipelines and workflows in bioinformatics.  This group would like to accelerate and consolidate the Containers Platform as a Service, and the integration with other groups like Workflows & workbenches and Software tools (Bio.Tools). To do so we proposed to have a 2.5 days hackathon. In practice the hackathon will give us the opportunity to work on three different topics: Improve the current metadata and definitions for BioContainers and increase the number of containers in  Biocontainers.  Integration of Biocontainers (https://biocontainers.pro/) and other initiatives Bioshadock (http://bioshadock.genouest.org/), BioConda. Connect better the containers registry (http://biocontainers.pro/registry) with Bio.tools and Workflow systems such as Galaxy and CWL. Define a strategy (Metadata) for “Training Containers”, design an infrastructure for hosting containers in ELIXIR and engage the training community to create containers for training purposes. 2017-10-09 09:00:00 UTC 2017-10-11 00:00:00 UTC 11 Rue Pierre et Marie Curie, Paris, France 11 Rue Pierre et Marie Curie Paris France [] [] [] workshops_and_courses [] []
  • Elixir Board Meeting

    13 November 2017

    Paris, France

    Elixir node event
    Elixir Board Meeting https://tess.elixir-europe.org/events/elixir-board-meeting-paris This meeting is only open to the ELIXIR Board and Observers. 2017-11-13 09:00:00 UTC 2017-11-13 00:00:00 UTC Paris, France, Paris, France Paris, France Paris France [] [] [] meetings_and_conferences [] []
  • Ensembl Browser Workshop, Bogota, 11 February 2018

    11 February 2018

    Bogota, Colombia

    Elixir node event
    Ensembl Browser Workshop, Bogota, 11 February 2018 https://tess.elixir-europe.org/events/ensembl-browser-workshop-bogota-11-february-2018 Work with the Ensembl Outreach team to get to grips with the Ensembl browser, accessing gene, variation, comparative genomics and regulation data, and mine these data with BioMart. 2018-02-11 09:00:00 UTC 2018-02-11 17:00:00 UTC Universidad de los Andes - UniAndes, Bogota, Colombia Universidad de los Andes - UniAndes Bogota Colombia 111711 [] Astrid Gall [] [] [] [] []
  • RNA-Seq analysis using Galaxy

    7 - 9 August 2018

    Brisbane, Australia

    RNA-Seq analysis using Galaxy https://tess.elixir-europe.org/events/rna-seq-analysis-using-galaxy-4bdade29-08f1-43f1-9565-80c67e622d6d 2018-08-07 09:00:00 UTC 2018-08-09 00:00:00 UTC QFAB Room 3.146, Queensland Bioscience Precinct, The University of Queensland, St Lucia, Brisbane, Australia Room 3.146, Queensland Bioscience Precinct, The University of Queensland, St Lucia Brisbane Australia 4067 [] training@qfab.org [] [] workshops_and_courses [] []
  • Genome assembly using Galaxy

    4 - 6 September 2018

    Brisbane, Australia

    Genome assembly using Galaxy https://tess.elixir-europe.org/events/genome-assembly-using-galaxy-4c8c0590-499b-4945-a1be-19e94725fe48 2018-09-04 09:00:00 UTC 2018-09-06 00:00:00 UTC QFAB Room 3.146, Queensland Bioscience Precinct, The University of Queensland, St Lucia , Brisbane, Australia Room 3.146, Queensland Bioscience Precinct, The University of Queensland, St Lucia Brisbane Australia 4067 [] training@qfab.org [] [] workshops_and_courses [] []
  • Implementation of Data Management Plans & Data Stewardship in practice

    11 September 2018

    Athens, Greece

    Elixir node event
    Implementation of Data Management Plans & Data Stewardship in practice https://tess.elixir-europe.org/events/implementation-of-data-management-plans-data-stewardship-in-practice ELIXIR workshop “Implementation of Data Management Plans & Data Stewardship in practice”, taking place on Sept 11, 2018 as part of the ECCB2018 in Athens, Greece. 2018-09-11 17:30:00 UTC 2018-09-11 19:00:00 UTC Hellenic Society for Computational Biology Stavros Niarchos Foundation Cultural Center, 364, Leoforos Andrea Siggrou, Athens, Greece Stavros Niarchos Foundation Cultural Center, 364, Leoforos Andrea Siggrou Athens Attica Greece Data management Data submission, annotation and curation Stavros Niarchos Foundation Cultural Center [] bioinformaticiansdata stewards 30 workshops_and_courses registration_of_interest data managementdata stewardshipeLearningEeLP
  • RNA-Seq analysis using Galaxy

    18 - 20 September 2018

    Brisbane, Australia

    RNA-Seq analysis using Galaxy https://tess.elixir-europe.org/events/rna-seq-analysis-using-galaxy-99676e29-b720-4387-b14e-a1ae64b772ad 2018-09-18 09:00:00 UTC 2018-09-20 00:00:00 UTC QFAB Room 3.141, Queensland Bioscience Precinct, The University of Queensland, St Lucia, Brisbane, Australia Room 3.141, Queensland Bioscience Precinct, The University of Queensland, St Lucia Brisbane Australia 4067 Bioinformatics University of Queensland training@qfab.org [] [] workshops_and_courses [] Galaxy RNA-Seqbioinformatics
  • Variant detection using Galaxy

    18 - 20 September 2018

    Brisbane, Australia

    Variant detection using Galaxy https://tess.elixir-europe.org/events/variant-detection-using-galaxy-19aa16bf-f8a0-4693-bbfb-53bf379662af 2018-09-18 09:00:00 UTC 2018-09-20 00:00:00 UTC QFAB Room 3.146 Queensland Bioscience Precinct The University of Queensland St Lucia , Brisbane, Australia Room 3.146 Queensland Bioscience Precinct The University of Queensland St Lucia Brisbane Australia 4067 [] training@qfab.org [] [] [] [] []
  • Ontological Annotation of Datasets: "1st NanoCommons Hackathon"

    9 October 2018

    Athens, Greece

    Ontological Annotation of Datasets: "1st NanoCommons Hackathon" https://tess.elixir-europe.org/events/ontological-annotation-of-datasets The participants will work using their own or mock datasets and search through established ontologies (e.g. eNanoMapper Ontology) for ontological annotations. The participants will also learn how to prepare electronic files (e.g. JSON) containing the raw data and the ontological metadata. 2018-10-09 09:00:00 UTC 2018-10-09 00:00:00 UTC Athens, Greece Athens Greece Ontology and terminology [] [] Biologists workshops_and_courses [] nanotoxicologyresearch dataontologyontologies, enanomapper
  • CABANA Train the Trainer Workshop

    15 - 16 November 2018

    Bogota, Colombia

    Elixir node event
    CABANA Train the Trainer Workshop https://tess.elixir-europe.org/events/cabana-train-the-trainer-workshop This course will provide new trainers with knowledge, skills, guidance and tips for developing and delivering training. 2018-11-15 09:30:00 UTC 2018-11-16 17:00:00 UTC Universidad de los Andes - UniAndes, Bogota, Colombia Universidad de los Andes - UniAndes Bogota Colombia 111711 [] Alejandro Reyes [] [] [] [] HDRUK
  • Untapping diversity through Metagenomics: An Introductory Workshop

    3 - 6 December 2018

    Bogota, Colombia

    Elixir node event
    Untapping diversity through Metagenomics: An Introductory Workshop https://tess.elixir-europe.org/events/untapping-diversity-through-metagenomics-an-introductory-workshop In this course participants will learn the basics of metagenomics, covering experimental design and workflows, moving through to microbiome analysis via amplicon sequencing and shotgun metagenomics. 2018-12-03 08:30:00 UTC 2018-12-06 17:30:00 UTC Universidad de los Andes - UniAndes, Bogota, Colombia Universidad de los Andes - UniAndes Bogota Colombia 111711 [] Alejandro Reyes [] [] [] [] []
  • CABANA Workshop: Untapping diversity through Metagenomics: An Introductory Workshop

    3 - 6 December 2018

    Bogota, Colombia

    Elixir node event
    CABANA Workshop: Untapping diversity through Metagenomics: An Introductory Workshop https://tess.elixir-europe.org/events/cabana-workshop-untapping-diversity-through-metagenomics-an-introductory-workshop In this course participants will learn the basics of metagenomics, covering experimental design and workflows, moving through to microbiome analysis via amplicon sequencing and shotgun metagenomics. 2018-12-03 08:30:00 UTC 2018-12-06 17:30:00 UTC Universidad de los Andes - UniAndes, Bogota, Colombia Universidad de los Andes - UniAndes Bogota Colombia 111711 [] Alejandro Reyes [] [] [] [] HDRUK
  • Ensembl Browser Workshop, Bogota, 11 February 2019

    11 February 2019

    Bogota, Colombia

    Elixir node event
    Ensembl Browser Workshop, Bogota, 11 February 2019 https://tess.elixir-europe.org/events/ensembl-browser-workshop-bogota-11-february-2019 Work with the Ensembl Outreach team to get to grips with the Ensembl browser, accessing gene, variation, comparative genomics and regulation data, and mine these data with BioMart. 2019-02-11 09:00:00 UTC 2019-02-11 17:00:00 UTC Universidad de los Andes - UniAndes, Bogota, Colombia Universidad de los Andes - UniAndes Bogota Colombia 111711 [] Astrid Gall [] [] [] [] HDRUK
  • Ensembl REST API Workshop, Bogota, 12 February 2018

    12 February 2019

    Bogota, Colombia

    Elixir node event
    Ensembl REST API Workshop, Bogota, 12 February 2018 https://tess.elixir-europe.org/events/ensembl-rest-api-workshop-bogota-12-february-2018 Work with Ensembl to master the Ensembl REST APIs and flexibly access genome-wide data, such as genes, variants, regulatory features, homologues and alignments. 2019-02-12 09:00:00 UTC 2019-02-12 15:00:00 UTC Universidad de los Andes - UniAndes, Bogota, Colombia Universidad de los Andes - UniAndes Bogota Colombia 111711 [] Astrid Gall [] [] [] [] []
  • Ensembl REST API Workshop, Bogota, 12 February 2019

    12 February 2019

    Bogota, Colombia

    Elixir node event
    Ensembl REST API Workshop, Bogota, 12 February 2019 https://tess.elixir-europe.org/events/ensembl-rest-api-workshop-bogota-12-february-2019 Work with Ensembl to master the Ensembl REST APIs and flexibly access genome-wide data, such as genes, variants, regulatory features, homologues and alignments. 2019-02-12 09:00:00 UTC 2019-02-12 15:00:00 UTC Universidad de los Andes - UniAndes, Bogota, Colombia Universidad de los Andes - UniAndes Bogota Colombia 111711 [] Astrid Gall [] [] [] [] HDRUK
  • NGS Platforms: how data generation impacts bioinformatics analysis? - Quality Control (1 day)

    1 April 2019

    Brisbane, Australia

    NGS Platforms: how data generation impacts bioinformatics analysis? - Quality Control (1 day) https://tess.elixir-europe.org/events/analysis-of-ngs-data-workshops-with-galaxy 2019-04-01 09:00:00 UTC 2019-04-01 17:00:00 UTC QFAB Translational Research Institute, 37, Kent Street, Brisbane, Australia Translational Research Institute, 37, Kent Street Brisbane Brisbane City Australia Bioinformatics [] [] [] [] [] bioinformaticsGalaxy
  • Genome assembly using Galaxy (1 day)

    2 April 2019

    Brisbane, Australia

    Genome assembly using Galaxy (1 day) https://tess.elixir-europe.org/events/analysis-of-ngs-data-workshops-with-galaxy-74b19a67-0776-4788-b50a-3892982068d6 2019-04-02 09:00:00 UTC 2019-04-02 17:00:00 UTC QFAB Translational Research Institute, 37, Kent Street, Brisbane, Australia Translational Research Institute, 37, Kent Street Brisbane Brisbane City Australia Bioinformatics [] [] [] [] [] bioinformaticsGalaxy RNA-Seq
  • RNA Seq analysis using Galaxy (1 day)

    3 April 2019

    Brisbane, Australia

    RNA Seq analysis using Galaxy (1 day) https://tess.elixir-europe.org/events/analysis-of-ngs-data-workshops-with-galaxy-d3626656-b283-49a3-8689-efbe53c8390d 2019-04-03 09:00:00 UTC 2019-04-03 17:00:00 UTC QFAB Translational Research Institute, 37, Kent Street, Brisbane, Australia Translational Research Institute, 37, Kent Street Brisbane Brisbane City Australia Bioinformatics [] [] [] [] [] bioinformaticsGalaxy RNA-Seq
  • Variant detection using Galaxy (1 day)

    4 April 2019

    Brisbane, Australia

    Variant detection using Galaxy (1 day) https://tess.elixir-europe.org/events/analysis-of-ngs-data-workshops-with-galaxy-9377cbe8-ded6-497e-a88e-0774f3bfd18e 2019-04-04 09:00:00 UTC 2019-04-04 17:00:00 UTC QFAB Translational Research Institute, 37, Kent Street, Brisbane, Australia Translational Research Institute, 37, Kent Street Brisbane Brisbane City Australia Bioinformatics [] [] [] [] [] Galaxybioinformatics RNA-Seq
  • ELIXIR Software Carpentry Training

    15 - 26 April 2019

    Paris

    Elixir node event
    ELIXIR Software Carpentry Training https://tess.elixir-europe.org/events/elixir-software-carpentry-training Software Carpentry aims to help researchers get their work done in less time and with less pain by teaching them basic research computing skills. This hands-on workshop will cover basic concepts and tools, including program design, version control, data management, and task automation. Participants will be encouraged to help one another and to apply what they have learned to their own research problems. 2019-04-15 09:00:00 UTC 2019-04-26 17:00:00 UTC IFB Institut Jacques Monod, 15 Rue Hélène Brion, 75013 Paris, France, Paris Institut Jacques Monod, 15 Rue Hélène Brion, 75013 Paris, France Paris France 75013 Computer science Jacques Monod Institut [] beginner bioinformaticians 25 workshops_and_courses first_come_first_served pythonGitShellunix
  • Assembly of long-read sequencing (2 days)

    7 - 8 May 2019

    Brisbane, Australia

    Assembly of long-read sequencing (2 days) https://tess.elixir-europe.org/events/assembly-of-long-read-sequencing-2-days 2019-05-07 09:00:00 UTC 2019-05-08 17:00:00 UTC QFAB Translational Research Institute, 37, Kent Street, Brisbane, Australia Translational Research Institute, 37, Kent Street Brisbane Brisbane City Australia Bioinformatics [] [] [] [] [] bioinformaticsGalaxy RNA-Seq
  • Software Carpentry - NFRF - National Hellenic Research Foundation

    3 - 4 June 2019

    Athens, Greece

    Software Carpentry - NFRF - National Hellenic Research Foundation https://tess.elixir-europe.org/events/software-carpentry-nfrf-national-hellenic-research-foundation Find out more at https://fpsom.github.io/2019-06-03-elixir-athens-eie/ 2019-06-03 09:00:00 UTC 2019-06-04 17:00:00 UTC Center for Research and Technology Hellas National Hellenic Research Foundation, 48, Leoforos Vasileos Konstantinou, Athens, Greece National Hellenic Research Foundation, 48, Leoforos Vasileos Konstantinou Athens Greece [] Fotis E. Psomopoulos <fpsom@certh.gr> [] [] 25 workshops_and_courses first_come_first_served []
  • UQ research data manager and FAIR

    5 June 2019

    Brisbane, Australia

    UQ research data manager and FAIR https://tess.elixir-europe.org/events/uq-research-data-manager-and-fair A short introduction to the UQRDM for CMM staff and a discussion about FAIR (Findable, Accessible, Interoperable, Reusable) data principles. 2019-06-05 10:00:00 UTC 2019-06-05 12:00:00 UTC CVL Brisbane, Australia Brisbane Australia 4067 [] [] [] workshops_and_courses [] []
  • Software Carpentry workshop "R for Reproducible Scientific Analysis"

    6 - 7 June 2019

    Madrid, Spain

    Elixir node event
    Software Carpentry workshop "R for Reproducible Scientific Analysis" https://tess.elixir-europe.org/events/software-carpentry-workshop-r-for-reproducible-scientific-analysis Software Carpentry aims to help researchers get their work done in less time and with less pain by teaching them basic research computing skills. This hands-on workshop will cover basic concepts and tools, including program design, version control, data management, and task automation. Participants will be encouraged to help one another and to apply what they have learned to their own research problems. The course is aimed at graduate students and other researchers. You don't need to have any previous knowledge of the tools that will be presented at the workshop. 2019-06-06 09:00:00 UTC 2019-06-07 17:00:00 UTC INB/ELIXIR-ES and CNIO Centro Nacional de Investigaciones Oncológicas, 3, Calle de Melchor Fernández Almagro, Madrid, Spain Centro Nacional de Investigaciones Oncológicas, 3, Calle de Melchor Fernández Almagro Madrid Madrid Spain 28029 Spanish National Cancer Research Centre (CNIO) EXCELERATEINB/ELIXIR-ESISCIII Graduate StudentsResearchers 20 workshops_and_courses registration_of_interest Software Carpentry R-programmingcontrol versionGitGitHubReproducibleResearchUnixShell scriptData visualizationData handling
  • Instruct course on Image Processing for Electron Microscopy and hybrid modelling

    8 - 11 July 2019

    Madrid, Spain

    Elixir node event
    Instruct course on Image Processing for Electron Microscopy and hybrid modelling https://tess.elixir-europe.org/events/instruct-course-on-image-processing-for-electron-microscopy-and-hybrid-modelling Software platforms as Scipion facilitate the integration of packages from many different laboratories, and promote the cross-checking of the results by alternative methods. Additionally, it keeps track of all the operations, parameters and steps undertaken from the raw data to the final maps and models, promoting, in this way, the reproducibility of the results. Scipion was originally designed to support image processing operations in Single Particle Analysis. However, due to the widespread need to related quasi atomic Coulomb potential maps and model building, with an ever growing potential of simultaneously combining features of both, Sicipion is currently being extended into the atomic modelling domain. In this way it integrates software like Coot, Chimera, Refmac, and Phenix, and the number of integrated packages and procedures is quickly growing. In addition to simplifying the access to all these software packages in an integrated manner, Scipion adds a traceability and reproducibility layer so that any other researcher can understand the modelling workflow followed to reach a particular model. The course is interesting for users to know the image processing and the atomic modelling capabilities of Scipion. This course will bring a timely introduction to these possibilities to investigators at all levels (Ph.D. students, postdocs and senior researchers) 2019-07-08 14:00:00 UTC 2019-07-11 13:00:00 UTC Centro Nacional de Biotecnología, 3, Calle Darwin, Madrid, Spain Centro Nacional de Biotecnología, 3, Calle Darwin Madrid Madrid Spain Electron microscopy National Center for Biotechnology (CNB) [] [] workshops_and_courses registration_of_interest hybrid modellingelectron microscopyScipionimage processingReproducibleResearch
  • Carpentries Instructor Training - ATHENA RC

    15 - 17 July 2019

    Athens, Greece

    Carpentries Instructor Training - ATHENA RC https://tess.elixir-europe.org/events/carpentries-instructor-training-athena-rc Find out more at https://fpsom.github.io/2019-07-15-ttt-ELIXIR-Athens/ 2019-07-15 12:00:00 UTC 2019-07-17 12:00:00 UTC Center for Research and Technology Hellas Athena Research & Innovation Center in Information Communication & Knowledge Technologies, 6, Artemidos, Athens, Greece Athena Research & Innovation Center in Information Communication & Knowledge Technologies, 6, Artemidos Athens Greece [] Fotis E. Psomopoulos <fpsom@certh.gr> [] [] 25 workshops_and_courses first_come_first_served []
  • 4 Simple recommendations for Open Source Software workshop

    17 - 19 July 2019

    Athens, Greece

    4 Simple recommendations for Open Source Software workshop https://tess.elixir-europe.org/events/4-simple-recommendations-for-open-source-software-workshop Find out more at https://fpsom.github.io/2019-07-15-ttt-ELIXIR-Athens/ 2019-07-17 12:00:00 UTC 2019-07-19 12:00:00 UTC Center for Research and Technology Hellas Athena Research & Innovation Center in Information Communication & Knowledge Technologies, 6, Artemidos, Athens, Greece Athena Research & Innovation Center in Information Communication & Knowledge Technologies, 6, Artemidos Athens Greece [] Fotis E. Psomopoulos <fpsom@certh.gr> [] [] workshops_and_courses first_come_first_served []
  • NGS Platforms: how data generation impacts bioinformatics analysis? - Quality Control (1 day)

    29 July 2019

    Brisbane, Australia

    NGS Platforms: how data generation impacts bioinformatics analysis? - Quality Control (1 day) https://tess.elixir-europe.org/events/analysis-of-ngs-data-workshops-with-galaxy-2ff9b072-1103-4692-843f-ea46c80b0b82 2019-07-29 09:00:00 UTC 2019-07-29 17:00:00 UTC QFAB Translational Research Institute, 37, Kent Street, Brisbane, Australia Translational Research Institute, 37, Kent Street Brisbane Brisbane City Australia [] [] [] [] [] bioinformaticsGalaxy
  • Genome assembly using Galaxy (1 day)

    30 July 2019

    Brisbane, Australia

    Genome assembly using Galaxy (1 day) https://tess.elixir-europe.org/events/analysis-of-ngs-data-workshops-with-galaxy-f678f24b-9a45-4be8-a024-c4d604e4375c 2019-07-30 09:00:00 UTC 2019-07-30 17:00:00 UTC QFAB Translational Research Institute, 37, Kent Street, Brisbane, Australia Translational Research Institute, 37, Kent Street Brisbane Brisbane City Australia [] [] [] [] [] bioinformaticsGalaxy RNA-Seq
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