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  • Genome assembly and annotation course 2

    19 - 23 June 2017

    Ljubljana, Slovenia

    Elixir node event
    Genome assembly and annotation course 2 https://tess.elixir-europe.org/events/genome-assembly-and-annotation-course-2 ELIXIR Genome assembly and annotation course 2, June 19-23 2017 at the University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia 2017-06-19 09:00:00 UTC 2017-06-23 17:00:00 UTC ELIXIR SI, University of Ljubljana, Faculty of Medicine University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia University of Ljubljana, Faculty of Medicine Ljubljana Slovenia Genomics University of Ljubljana, Faculty of Medicine [] life scientistsResearchersPhD students workshops_and_courses registration_of_interest genomicsassemblytrainingeLearningEeLP
  • Genome Assembly and Annotation

    19 - 23 June 2017

    Ljubljana, Slovenia

    Genome Assembly and Annotation https://tess.elixir-europe.org/events/genome-assembly-and-annotation The course is aimed at researchers interested in learning more about genome assembly and annotation. It will include information useful for both the beginner and the more advanced user. We will start by introducing general concepts and then continue to step-by-step describe all major components of a genome assembly and annotation workflow, from raw data all the way to a final assembled and annotated genome. There will be a mix of lectures and hands-on practical exercises using command line Linux. After the course the participants will be aware of common practices and commonly used tools and be able to run assembly and annotation projects on their own. More information and registration 2017-06-19 10:00:00 UTC 2017-06-23 17:30:00 UTC Ljubljana, Slovenia Ljubljana Slovenia [] [] [] workshops_and_courses [] []
  • 3Gb-TEST NGS Course Ljubljana 2017

    25 - 27 September 2017

    Ljubljana, Slovenia

    3Gb-TEST NGS Course Ljubljana 2017 https://tess.elixir-europe.org/events/3gb-test-ngs-in-a-diagnostic-setting A 3-day course on NGS Ljubljana, Slovenia in the period of 25-27 September 2017. The focus of the course is on clinical diagnostics using exome/genome sequences, variant identification and analysis including afternoon practical sessions. 2017-09-25 08:00:00 UTC 2017-09-27 18:00:00 UTC 3Gb-TEST Best Western Premier Hotel Slon, Ljubljana, Slovenia Best Western Premier Hotel Slon Ljubljana Slovenia Sequencing Exome sequencing Sequence analysis [] J.A.Lopez_Hernandez@lumc.nl In collaboration with RD-Connect [] 100 workshops_and_courses registration_of_interest NGSDiagnosisWESWGSELSI
  • 3GB-TEST Next-Generation Sequencing Course

    25 - 27 September 2017

    Ljubljana, Slovenia

    Elixir node event
    3GB-TEST Next-Generation Sequencing Course https://tess.elixir-europe.org/events/3gb-test-next-generation-sequencing-course A 3-day course on NGS Ljubljana, Slovenia in the period of 25-27 October 2017. The focus of the course is on clinical diagnostics using exome/genome sequences, variant identification and analysis including afternoon practical sessions.   Course page: http://3gb-test.eu/ The post 3GB-TEST Next-Generation Sequencing Course appeared first on Dutch Techcentre for Life Sciences. 2017-09-25 09:00:00 UTC 2017-09-27 00:00:00 UTC Ljubljana, Slovenia, Ljubljana, Slovenia Ljubljana, Slovenia Ljubljana Slovenia [] [] [] workshops_and_courses [] []
  • ELIXIR biocontainers hackathon

    9 - 11 October 2017

    Paris, France

    ELIXIR biocontainers hackathon https://tess.elixir-europe.org/events/elixir-biocontainers-hackathon The “ELIXIR Software Deployment Group” is one of the six working groups of the ELIXIR tools platform. It has been recently formed to support bioinformatics software deployment efforts including packages and containers. At the moment this group is sustained by ELIXIR Nodes sharing a common interest to work together on a harmonised strategy. The activities of this group are extremely relevant to other two groups within ELIXIR Tools platforms: “Workflows & workbenches” and “Software development best practices” because it represents the starting point for the development of reproducible pipelines and workflows in bioinformatics.  This group would like to accelerate and consolidate the Containers Platform as a Service, and the integration with other groups like Workflows & workbenches and Software tools (Bio.Tools). To do so we proposed to have a 2.5 days hackathon. In practice the hackathon will give us the opportunity to work on three different topics: Improve the current metadata and definitions for BioContainers and increase the number of containers in  Biocontainers.  Integration of Biocontainers (https://biocontainers.pro/) and other initiatives Bioshadock (http://bioshadock.genouest.org/), BioConda. Connect better the containers registry (http://biocontainers.pro/registry) with Bio.tools and Workflow systems such as Galaxy and CWL. Define a strategy (Metadata) for “Training Containers”, design an infrastructure for hosting containers in ELIXIR and engage the training community to create containers for training purposes. 2017-10-09 09:00:00 UTC 2017-10-11 00:00:00 UTC 11 Rue Pierre et Marie Curie, Paris, France 11 Rue Pierre et Marie Curie Paris France [] [] [] workshops_and_courses [] []
  • Elixir Board Meeting

    13 November 2017

    Paris, France

    Elixir node event
    Elixir Board Meeting https://tess.elixir-europe.org/events/elixir-board-meeting-paris This meeting is only open to the ELIXIR Board and Observers. 2017-11-13 09:00:00 UTC 2017-11-13 00:00:00 UTC Paris, France, Paris, France Paris, France Paris France [] [] [] meetings_and_conferences [] []
  • Think Tank Hackathon

    6 - 7 February 2018

    Ljubljana, Slovenia

    Elixir node event
    Think Tank Hackathon https://tess.elixir-europe.org/events/think-tank-hackathon CHARME Think Tank Hackathon, Feb 6-7, 2018 at the University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia 2018-02-06 09:00:00 UTC 2018-02-07 17:00:00 UTC CHARME, ELIXIR Slovenia, NIB University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia University of Ljubljana, Faculty of Medicine Ljubljana Slovenia Computer science University of Ljubljana, Faculty of Medicine [] life scientistsResearchersPhD students 20 workshops_and_courses registration_of_interest Computer sciencelife sciencestrainingeLearningEeLP
  • Ensembl Browser Workshop, Bogota, 11 February 2018

    11 February 2018

    Bogota, Colombia

    Elixir node event
    Ensembl Browser Workshop, Bogota, 11 February 2018 https://tess.elixir-europe.org/events/ensembl-browser-workshop-bogota-11-february-2018 Work with the Ensembl Outreach team to get to grips with the Ensembl browser, accessing gene, variation, comparative genomics and regulation data, and mine these data with BioMart. 2018-02-11 09:00:00 UTC 2018-02-11 17:00:00 UTC Universidad de los Andes - UniAndes, Bogota, Colombia Universidad de los Andes - UniAndes Bogota Colombia 111711 [] Astrid Gall [] [] [] [] []
  • Introductory Linux Tutorial for Life Sciences 3

    13 - 15 February 2018

    Elixir node event
    Introductory Linux Tutorial for Life Sciences 3 https://tess.elixir-europe.org/events/introductory-linux-tutorial-for-life-sciences-3 ELIXIR tutorial "Introductory Linux Tutorial for Life Sciences 3", Feb 13-15, 2018 2018-02-13 09:00:00 UTC 2018-02-15 17:00:00 UTC ELIXIR Slovenia, ELIXIR Sweden, NBIS University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia University of Ljubljana, Faculty of Medicine Ljubljana Slovenia Computer science University of Ljubljana, Faculty of MedicineNBIS [] life scientistsResearchersPhD studentsUndergraduate students workshops_and_courses registration_of_interest Computer sciencelife sciencestrainingeLearningEeLP
  • PRACE HPC Workshop 2018 - Parallel computing in bioinformatics research

    30 May 2018

    Ljubljana, Slovenia

    Elixir node event
    PRACE HPC Workshop 2018 - Parallel computing in bioinformatics research https://tess.elixir-europe.org/events/prace-hpc-workshop-2018-parallel-computing-in-bioinformatics-research HPC PRACE workshop "Parallel computing in bioinformatics research", May 30, 2018 at the HPC PraceDays2018, Ljubljana, Slovenia 2018-05-30 14:00:00 UTC 2018-05-30 16:30:00 UTC PRACE Faculty of Law, University of Ljubljana, Poljanski nasip 2, Ljubljana, Slovenia Faculty of Law, University of Ljubljana, Poljanski nasip 2 Ljubljana Slovenia Comparative genomics University of Ljubljana, Faculty of Law [] life scientistsResearchers 30 workshops_and_courses registration_of_interest comparative genomicshigh-performance computingtrainingeLearningEeLP
  • Implementation of Data Management Plans & Data Stewardship in practice

    11 September 2018

    Athens, Greece

    Elixir node event
    Implementation of Data Management Plans & Data Stewardship in practice https://tess.elixir-europe.org/events/implementation-of-data-management-plans-data-stewardship-in-practice ELIXIR workshop “Implementation of Data Management Plans & Data Stewardship in practice”, taking place on Sept 11, 2018 as part of the ECCB2018 in Athens, Greece. 2018-09-11 17:30:00 UTC 2018-09-11 19:00:00 UTC Hellenic Society for Computational Biology Stavros Niarchos Foundation Cultural Center, 364, Leoforos Andrea Siggrou, Athens, Greece Stavros Niarchos Foundation Cultural Center, 364, Leoforos Andrea Siggrou Athens Attica Greece Data management Data submission, annotation and curation Stavros Niarchos Foundation Cultural Center [] bioinformaticiansdata stewards 30 workshops_and_courses registration_of_interest data managementdata stewardshipeLearningEeLP
  • Ontological Annotation of Datasets: "1st NanoCommons Hackathon"

    9 October 2018

    Athens, Greece

    Ontological Annotation of Datasets: "1st NanoCommons Hackathon" https://tess.elixir-europe.org/events/ontological-annotation-of-datasets The participants will work using their own or mock datasets and search through established ontologies (e.g. eNanoMapper Ontology) for ontological annotations. The participants will also learn how to prepare electronic files (e.g. JSON) containing the raw data and the ontological metadata. 2018-10-09 09:00:00 UTC 2018-10-09 00:00:00 UTC Athens, Greece Athens Greece Ontology and terminology [] [] Biologists workshops_and_courses [] nanotoxicologyresearch dataontologyontologies, enanomapper
  • ELIXIR Board meeting (Ljubljana)

    12 - 13 November 2018

    Ljubljana, Slovenia

    ELIXIR Board meeting (Ljubljana) https://tess.elixir-europe.org/events/elixir-board-meeting-ljubljana The ELIXIR Board meeting takes place in Ljubljana, Slovenia on 12 - 13 November 2018. This meeting is only open to the ELIXIR Board and Observers. Agenda items, location and venue will be confirmed to members in the near future.  Any inquiries about ELIXIR Board meetings event should be sent to info@elixir-europe.org. 2018-11-12 09:00:00 UTC 2018-11-13 00:00:00 UTC Ljubljana, Slovenia Ljubljana Slovenia [] [] [] meetings_and_conferences [] []
  • CABANA Train the Trainer Workshop

    15 - 16 November 2018

    Bogota, Colombia

    Elixir node event
    CABANA Train the Trainer Workshop https://tess.elixir-europe.org/events/cabana-train-the-trainer-workshop This course will provide new trainers with knowledge, skills, guidance and tips for developing and delivering training. 2018-11-15 09:30:00 UTC 2018-11-16 17:00:00 UTC Universidad de los Andes - UniAndes, Bogota, Colombia Universidad de los Andes - UniAndes Bogota Colombia 111711 [] Alejandro Reyes [] [] [] [] HDRUK
  • Untapping diversity through Metagenomics: An Introductory Workshop

    3 - 6 December 2018

    Bogota, Colombia

    Elixir node event
    Untapping diversity through Metagenomics: An Introductory Workshop https://tess.elixir-europe.org/events/untapping-diversity-through-metagenomics-an-introductory-workshop In this course participants will learn the basics of metagenomics, covering experimental design and workflows, moving through to microbiome analysis via amplicon sequencing and shotgun metagenomics. 2018-12-03 08:30:00 UTC 2018-12-06 17:30:00 UTC Universidad de los Andes - UniAndes, Bogota, Colombia Universidad de los Andes - UniAndes Bogota Colombia 111711 [] Alejandro Reyes [] [] [] [] []
  • CABANA Workshop: Untapping diversity through Metagenomics: An Introductory Workshop

    3 - 6 December 2018

    Bogota, Colombia

    Elixir node event
    CABANA Workshop: Untapping diversity through Metagenomics: An Introductory Workshop https://tess.elixir-europe.org/events/cabana-workshop-untapping-diversity-through-metagenomics-an-introductory-workshop In this course participants will learn the basics of metagenomics, covering experimental design and workflows, moving through to microbiome analysis via amplicon sequencing and shotgun metagenomics. 2018-12-03 08:30:00 UTC 2018-12-06 17:30:00 UTC Universidad de los Andes - UniAndes, Bogota, Colombia Universidad de los Andes - UniAndes Bogota Colombia 111711 [] Alejandro Reyes [] [] [] [] HDRUK
  • ELIXIR TtR course: Basic genomics using advanced analysis tools

    20 - 21 December 2018

    Ljubljana, Slovenia

    Elixir node event
    ELIXIR TtR course: Basic genomics using advanced analysis tools https://tess.elixir-europe.org/events/elixir-ttr-course-basic-genomics-using-advanced-analysis-tools **NEW DATE FOR THE COURSE HAS BEEN SET: Dec. 20-21** **ELIXIR TtR course: Basic genomics using advanced analysis tools Genomic Data Science with Galaxy** **December 20-21, 2018**, Faculty of Medicine, Vrazov trg 2, Ljubljana (Slovenia) Galaxy is an open source, web-based platform for data intensive biomedical research. The Galaxy Platform provides user friendly software for producing reproducible genomic pipelines for data analysis. This workshop will provide a 2 day introductory session to Galaxy software system. The course will be in English. The course will take place in the computer classroom at the Institute of Biostatistics and Medical Informatics (IBMI), Faculty of Medicine, Vrazov trg 2, Ljubljana. **The limit of participants is 20**. This course will focus on introducing the Galaxy user interface and how it can be used for basic genomic analyses. Sessions will be intensive and hands-on, and taught by experienced instructors from the Galaxy Community. We will cover the basic features of Galaxy, including where to find tools, how to import and use your data, and an introduction to workflows. This session is recommended for anyone who has not used, or only rarely uses Galaxy. **Program topics:** Quick introduction to Galaxy UI (20.12. morning) From peaks to genes (20.12. morning) Reference-based RNA-seq - Quality control (20.12. afternoon) Reference-based RNA-seq - Sequencing (21.12. morning) Lecturers will be **Christophe Antoniewski** and **Olivier Inizan** from ELIXIR France. Course is organised by **ELIXIR Slovenia** in collaboration with **ELIXIR France**. ELIXIR is an European ESFRI priority research infrastructure for bioinformatics that provides databases, (software) tools, services and training (including training materials) for information, cloud storage and supercomputers in the area of life sciences. It coordinates, develops, integrates and sustains life science (bioinformatics) resources across Europe. **Prerequisites:** Wi-Fi enabled laptop with a modern web browser. Latest versions of Google Chrome, Firefox, Safari and Opera will work best. **Location: Faculty of Medicine, University of Ljubljana** If you have any questions about this course, please contact ELIXIR-SI 2018-12-20 09:00:00 UTC 2018-12-21 12:00:00 UTC ELIXIR Slovenia and Faculty of Medicine, University of Ljubljana University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia University of Ljubljana, Faculty of Medicine Ljubljana Central Slovenia Slovenia SI-1000 Genomics University of Ljubljana, Faculty of Medicine elixir@mf.uni-lj.si [] life scientistsPostgraduate studentsbeginner bioinformaticians 20 workshops_and_courses registration_of_interest galaxygenomicstrainingeLearningEeLP
  • ELIXIR Data Carpentry - Ljubljana

    29 - 30 January 2019

    Ljubljana, Slovenia

    Elixir node event
    ELIXIR Data Carpentry - Ljubljana https://tess.elixir-europe.org/events/elixir-data-carpentry-ljubljana **ELIXIR Data Carpentry for Genomics - Ljubljana** **29-30 Jan 2019, Faculty of Medicine, Vrazov trg 2, Ljubljana (Slovenia)** **ELIXIR Data Carpentry for Genomics** is a course intended for all those who would like to learn more about the basics of data processing and data management in the field of genomics. The course will be in English. **The limit of participants is 20.** If there are more applicants than available places, the participants will be selected based on their institutional and geographic background, while also taking into account the time of their registration. The course is free of charge. You can find more info about the course on the [**ELIXIR-SI eLearning Platform (EeLP)**](https://elixir.mf.uni-lj.si/course/view.php?id=44). The course will take place in the computer classroom at the **Institute of Biostatistics and Medical Informatics (IBMI)**, Faculty of Medicine, Vrazov trg 2, Ljubljana. Sessions will be intensive and hands-on, and taught by experienced data carpentry instructors. Instructors will be **Vasilis Lenis (University of Plymouth, UK)** and **Živa Ramšak (ELIXIR Slovenia; National Institute of Biology Ljubljana)**. The course is recommended for anyone who would like to learn more about how to process and manage big scale genomic data. **Program topics:** * Introduction - Presentation of ELIXIR Slovenia and ELIXIR-SI eLearning Platform * Project management in genomics and introduction to cloud computing * Introduction to Linux/Unix command line * Data wrangling and processing for genomics The course is organised by **ELIXIR Slovenia** in collaboration with **ELIXIR Hub** and **Data & Software Carpentry**. 2019-01-29 08:15:00 UTC 2019-01-30 12:30:00 UTC ELIXIR Slovenia, University of Ljubljana, Faculty of Medicine University of Ljubljana, Faculty of Medicine, Institute for Biostatistics and Medical Informatics, Vrazov Trg 2, SI-1000, Ljubljana, Slovenia, Ljubljana, Slovenia University of Ljubljana, Faculty of Medicine, Institute for Biostatistics and Medical Informatics, Vrazov Trg 2, SI-1000, Ljubljana, Slovenia Ljubljana Slovenia SI-1000 Genomics Data management Computer science University of Ljubljana, Faculty of Medicine ELIXIR EXCELERATE Life Science ResearchersPhD studentsMaster students 20 workshops_and_courses registration_of_interest EeLPeLearninggenomicsData carpentry
  • Ensembl Browser Workshop, Bogota, 11 February 2019

    11 February 2019

    Bogota, Colombia

    Elixir node event
    Ensembl Browser Workshop, Bogota, 11 February 2019 https://tess.elixir-europe.org/events/ensembl-browser-workshop-bogota-11-february-2019 Work with the Ensembl Outreach team to get to grips with the Ensembl browser, accessing gene, variation, comparative genomics and regulation data, and mine these data with BioMart. 2019-02-11 09:00:00 UTC 2019-02-11 17:00:00 UTC Universidad de los Andes - UniAndes, Bogota, Colombia Universidad de los Andes - UniAndes Bogota Colombia 111711 [] Astrid Gall [] [] [] [] HDRUK
  • Ensembl REST API Workshop, Bogota, 12 February 2018

    12 February 2019

    Bogota, Colombia

    Elixir node event
    Ensembl REST API Workshop, Bogota, 12 February 2018 https://tess.elixir-europe.org/events/ensembl-rest-api-workshop-bogota-12-february-2018 Work with Ensembl to master the Ensembl REST APIs and flexibly access genome-wide data, such as genes, variants, regulatory features, homologues and alignments. 2019-02-12 09:00:00 UTC 2019-02-12 15:00:00 UTC Universidad de los Andes - UniAndes, Bogota, Colombia Universidad de los Andes - UniAndes Bogota Colombia 111711 [] Astrid Gall [] [] [] [] []
  • Ensembl REST API Workshop, Bogota, 12 February 2019

    12 February 2019

    Bogota, Colombia

    Elixir node event
    Ensembl REST API Workshop, Bogota, 12 February 2019 https://tess.elixir-europe.org/events/ensembl-rest-api-workshop-bogota-12-february-2019 Work with Ensembl to master the Ensembl REST APIs and flexibly access genome-wide data, such as genes, variants, regulatory features, homologues and alignments. 2019-02-12 09:00:00 UTC 2019-02-12 15:00:00 UTC Universidad de los Andes - UniAndes, Bogota, Colombia Universidad de los Andes - UniAndes Bogota Colombia 111711 [] Astrid Gall [] [] [] [] HDRUK
  • ELIXIR Software Carpentry - Ljubljana

    16 - 17 May 2019

    Ljubljana, Slovenia

    Elixir node event
    ELIXIR Software Carpentry - Ljubljana https://tess.elixir-europe.org/events/elixir-software-carpentry-ljubljana **ELIXIR Software Carpentry - Ljubljana** **16-17 May 2019, Faculty of Medicine,** **Vrazov trg 2, Ljubljana (Slovenia)** ELIXIR Software Carpentry is a workshop intended for all those who would like to learn more about the basics of R - software environment used in bioinformatics for statistical computing and graphics. The workshop will include a keynote lecture about data management in ELIXIR-SI. The workshop will be in English. The course will take place in the computer classroom at the Institute of Biostatistics and Medical Informatics (IBMI), Faculty of Medicine, Vrazov trg 2, Ljubljana. **The course is free of charge. The limit of participants is 20.** If the number of registered applicants exceeds this limit, selection of participants will be made. It will be based on the time of their registration and their affiliations, as well as geographic distribution. Sessions will be intensive and hands-on, and taught by experienced software carpentry instructors. The course is recommended for anyone who would like to learn more about using statistical computing and graphics in the bioinformatics field, both for research or operational work. **Program topics:** - Keynote lecture about ELIXIR-SI data management - Introduction to Linux/Unix command line - Git - R **The course is organised by ELIXIR Slovenia in collaboration with Data & Software Carpentry.** More info about the course is available on the **[ELIXIR-SI eLearning Platform (EeLP)](https://elixir.mf.uni-lj.si/course/view.php?id=46)**. 2019-05-16 09:00:00 UTC 2019-05-17 16:00:00 UTC ELIXIR Slovenia, University of Ljubljana, Faculty of Medicine University of Ljubljana, Faculty of Medicine, Vrazov trg 2, SI-1000 Ljubljana, Slovenia, Ljubljana, Slovenia University of Ljubljana, Faculty of Medicine, Vrazov trg 2, SI-1000 Ljubljana, Slovenia Ljubljana Central Slovenia Slovenia SI-1000 Statistics and probability Data management Computer science University of Ljubljana, Faculty of Medicine elixir@mf.uni-lj.si Data & Software Carpentry Life Science ResearchersBeginners in statisticsPhD studentsMaster students 20 workshops_and_courses registration_of_interest EeLPeLearningStatistics R-programmingSoftware Carpentry
  • CABANA Workshop: Analysis of Crop Genomics Data

    2 - 6 December 2019

    Bogota, Colombia

    Elixir node event
    CABANA Workshop: Analysis of Crop Genomics Data https://tess.elixir-europe.org/events/cabana-workshop-analysis-of-crop-genomics-data This course will introduce crop biologists to methods and approaches for analysing crop genomics data. 2019-12-02 08:30:00 UTC 2019-12-06 12:45:00 UTC Universidad de los Andes - UniAndes, Bogota, Colombia Universidad de los Andes - UniAndes Bogota Colombia 111711 [] Marco Cristancho [] [] [] [] HDRUK
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