Genome assembly and annotation course 2
19 - 23 June 2017
Ljubljana, SloveniaGenome assembly and annotation course 2 https://elixir.mf.uni-lj.si/course/view.php?id=22 https://tess.elixir-europe.org/events/genome-assembly-and-annotation-course-2 ELIXIR Genome assembly and annotation course 2, June 19-23 2017 at the University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia 2017-06-19 09:00:00 UTC 2017-06-23 17:00:00 UTC ELIXIR SI, University of Ljubljana, Faculty of Medicine University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia University of Ljubljana, Faculty of Medicine Ljubljana Slovenia Genomics University of Ljubljana, Faculty of Medicine  life scientistsResearchersPhD students workshops_and_courses registration_of_interest genomicsassemblytrainingeLearningEeLP
Elixir Board Meeting
13 November 2017
Paris, FranceElixir Board Meeting https://www.elixir-europe.org/events/elixir-board-meeting-paris https://tess.elixir-europe.org/events/elixir-board-meeting-paris This meeting is only open to the ELIXIR Board and Observers. 2017-11-13 09:00:00 UTC 2017-11-13 00:00:00 UTC Paris, France, Paris, France Paris, France Paris France    meetings_and_conferences  
PRACE HPC Workshop 2018 - Parallel computing in bioinformatics research
30 May 2018
Ljubljana, SloveniaPRACE HPC Workshop 2018 - Parallel computing in bioinformatics research https://elixir.mf.uni-lj.si/course/view.php?id=34 https://tess.elixir-europe.org/events/prace-hpc-workshop-2018-parallel-computing-in-bioinformatics-research HPC PRACE workshop "Parallel computing in bioinformatics research", May 30, 2018 at the HPC PraceDays2018, Ljubljana, Slovenia 2018-05-30 14:00:00 UTC 2018-05-30 16:30:00 UTC PRACE Faculty of Law, University of Ljubljana, Poljanski nasip 2, Ljubljana, Slovenia Faculty of Law, University of Ljubljana, Poljanski nasip 2 Ljubljana Slovenia Comparative genomics University of Ljubljana, Faculty of Law  life scientistsResearchers 30 workshops_and_courses registration_of_interest comparative genomicshigh-performance computingtrainingeLearningEeLP
ELIXIR TtR course: Basic genomics using advanced analysis tools
20 - 21 December 2018
Ljubljana, SloveniaELIXIR TtR course: Basic genomics using advanced analysis tools https://elixir.mf.uni-lj.si/course/view.php?id=42 https://tess.elixir-europe.org/events/elixir-ttr-course-basic-genomics-using-advanced-analysis-tools **NEW DATE FOR THE COURSE HAS BEEN SET: Dec. 20-21** **ELIXIR TtR course: Basic genomics using advanced analysis tools Genomic Data Science with Galaxy** **December 20-21, 2018**, Faculty of Medicine, Vrazov trg 2, Ljubljana (Slovenia) Galaxy is an open source, web-based platform for data intensive biomedical research. The Galaxy Platform provides user friendly software for producing reproducible genomic pipelines for data analysis. This workshop will provide a 2 day introductory session to Galaxy software system. The course will be in English. The course will take place in the computer classroom at the Institute of Biostatistics and Medical Informatics (IBMI), Faculty of Medicine, Vrazov trg 2, Ljubljana. **The limit of participants is 20**. This course will focus on introducing the Galaxy user interface and how it can be used for basic genomic analyses. Sessions will be intensive and hands-on, and taught by experienced instructors from the Galaxy Community. We will cover the basic features of Galaxy, including where to find tools, how to import and use your data, and an introduction to workflows. This session is recommended for anyone who has not used, or only rarely uses Galaxy. **Program topics:** Quick introduction to Galaxy UI (20.12. morning) From peaks to genes (20.12. morning) Reference-based RNA-seq - Quality control (20.12. afternoon) Reference-based RNA-seq - Sequencing (21.12. morning) Lecturers will be **Christophe Antoniewski** and **Olivier Inizan** from ELIXIR France. Course is organised by **ELIXIR Slovenia** in collaboration with **ELIXIR France**. ELIXIR is an European ESFRI priority research infrastructure for bioinformatics that provides databases, (software) tools, services and training (including training materials) for information, cloud storage and supercomputers in the area of life sciences. It coordinates, develops, integrates and sustains life science (bioinformatics) resources across Europe. **Prerequisites:** Wi-Fi enabled laptop with a modern web browser. Latest versions of Google Chrome, Firefox, Safari and Opera will work best. **Location: Faculty of Medicine, University of Ljubljana** If you have any questions about this course, please contact ELIXIR-SI 2018-12-20 09:00:00 UTC 2018-12-21 12:00:00 UTC ELIXIR Slovenia and Faculty of Medicine, University of Ljubljana University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia University of Ljubljana, Faculty of Medicine Ljubljana Central Slovenia Slovenia SI-1000 Genomics University of Ljubljana, Faculty of Medicine email@example.com  life scientistsPostgraduate studentsbeginner bioinformaticians 20 workshops_and_courses registration_of_interest galaxygenomicstrainingeLearningEeLP
ELIXIR Software Carpentry Training
15 - 26 April 2019
ParisELIXIR Software Carpentry Training https://www.france-bioinformatique.fr/en/evenements/software-carpentry-2019 https://tess.elixir-europe.org/events/elixir-software-carpentry-training Software Carpentry aims to help researchers get their work done in less time and with less pain by teaching them basic research computing skills. This hands-on workshop will cover basic concepts and tools, including program design, version control, data management, and task automation. Participants will be encouraged to help one another and to apply what they have learned to their own research problems. 2019-04-15 09:00:00 UTC 2019-04-26 17:00:00 UTC IFB Institut Jacques Monod, 15 Rue Hélène Brion, 75013 Paris, France, Paris Institut Jacques Monod, 15 Rue Hélène Brion, 75013 Paris, France Paris France 75013 Computer science Jacques Monod Institut  beginner bioinformaticians 25 workshops_and_courses first_come_first_served pythonGitShellunix
Software Carpentry workshop "R for Reproducible Scientific Analysis"
6 - 7 June 2019
Madrid, SpainSoftware Carpentry workshop "R for Reproducible Scientific Analysis" https://mariakotouza.github.io/2019-06-06-elixir-inb-cnio/ https://tess.elixir-europe.org/events/software-carpentry-workshop-r-for-reproducible-scientific-analysis Software Carpentry aims to help researchers get their work done in less time and with less pain by teaching them basic research computing skills. This hands-on workshop will cover basic concepts and tools, including program design, version control, data management, and task automation. Participants will be encouraged to help one another and to apply what they have learned to their own research problems. The course is aimed at graduate students and other researchers. You don't need to have any previous knowledge of the tools that will be presented at the workshop. 2019-06-06 09:00:00 UTC 2019-06-07 17:00:00 UTC INB/ELIXIR-ES and CNIO Centro Nacional de Investigaciones Oncológicas, 3, Calle de Melchor Fernández Almagro, Madrid, Spain Centro Nacional de Investigaciones Oncológicas, 3, Calle de Melchor Fernández Almagro Madrid Madrid Spain 28029 Spanish National Cancer Research Centre (CNIO) EXCELERATEINB/ELIXIR-ESISCIII Graduate StudentsResearchers 20 workshops_and_courses registration_of_interest Software Carpentry R-programmingcontrol versionGitGitHubReproducibleResearchUnixShell scriptData visualizationData handling
Instruct course on Image Processing for Electron Microscopy and hybrid modelling
8 - 11 July 2019
Madrid, SpainInstruct course on Image Processing for Electron Microscopy and hybrid modelling http://i2pc.es/instruct-course-on-image-processing-for-electron-microscopy-and-hybrid-modelling-madrid-july-8-11-2019/ https://tess.elixir-europe.org/events/instruct-course-on-image-processing-for-electron-microscopy-and-hybrid-modelling Software platforms as Scipion facilitate the integration of packages from many different laboratories, and promote the cross-checking of the results by alternative methods. Additionally, it keeps track of all the operations, parameters and steps undertaken from the raw data to the final maps and models, promoting, in this way, the reproducibility of the results. Scipion was originally designed to support image processing operations in Single Particle Analysis. However, due to the widespread need to related quasi atomic Coulomb potential maps and model building, with an ever growing potential of simultaneously combining features of both, Sicipion is currently being extended into the atomic modelling domain. In this way it integrates software like Coot, Chimera, Refmac, and Phenix, and the number of integrated packages and procedures is quickly growing. In addition to simplifying the access to all these software packages in an integrated manner, Scipion adds a traceability and reproducibility layer so that any other researcher can understand the modelling workflow followed to reach a particular model. The course is interesting for users to know the image processing and the atomic modelling capabilities of Scipion. This course will bring a timely introduction to these possibilities to investigators at all levels (Ph.D. students, postdocs and senior researchers) 2019-07-08 14:00:00 UTC 2019-07-11 13:00:00 UTC Centro Nacional de Biotecnología, 3, Calle Darwin, Madrid, Spain Centro Nacional de Biotecnología, 3, Calle Darwin Madrid Madrid Spain Electron microscopy National Center for Biotechnology (CNB)   workshops_and_courses registration_of_interest hybrid modellingelectron microscopyScipionimage processingReproducibleResearch
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