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238 events found

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  • Resources for Computational Drug Discovery

    7 - 11 November 2016

    Hinxton, United Kingdom

    Resources for Computational Drug Discovery https://tess.elixir-europe.org/events/resources-for-computational-drug-discovery 2016-11-07 00:00:00 UTC 2016-11-11 00:00:00 UTC EMBL-EBI Wellcome Trust Genome Campus, Hinxton, United Kingdom Wellcome Trust Genome Campus Hinxton United Kingdom Bioinformatics [] [] [] workshops_and_courses [] drugdiscovery
  • Biological Interpretation of Next Generation Sequencing

    28 November - 2 December 2016

    Hinxton, United Kingdom

    Biological Interpretation of Next Generation Sequencing https://tess.elixir-europe.org/events/biological-interpretation-of-next-generation-sequencing 2016-11-28 00:00:00 UTC 2016-12-02 00:00:00 UTC EMBL-EBI Hinxton, United Kingdom Hinxton United Kingdom Genomics Bioinformatics [] [] [] workshops_and_courses [] []
  • Electronic Lab Notebook Introduction - Ghent

    18 April 2017

    Ghent, Belgium

    Elixir node event
    Electronic Lab Notebook Introduction - Ghent https://tess.elixir-europe.org/events/electronic-lab-notebook-introduction-ghent-638a1f0b-2d27-4f09-b291-72bee6d64baa 2017-04-18 10:00:00 UTC 2017-04-18 12:00:00 UTC VIB Bioinformatics Core PC room V114 1st floor front building VIB-UGent Research Building, Ghent, Belgium PC room V114 1st floor front building VIB-UGent Research Building Ghent Belgium 9052 [] [] [] [] [] []
  • Initiation GIMP and Inkscape Ghent

    2 May 2017

    Ghent, Belgium

    Elixir node event
    Initiation GIMP and Inkscape Ghent https://tess.elixir-europe.org/events/initiation-gimp-and-inkscape-ghent 2017-05-02 09:00:00 UTC 2017-05-02 17:00:00 UTC VIB Bioinformatics Core Bio-Accelerator, Ghent, Belgium Bio-Accelerator Ghent Belgium 9052 [] [] [] [] [] []
  • Initiation GIMP and Inkscape - Ghent

    9 May 2017

    Ghent, Belgium

    Elixir node event
    Initiation GIMP and Inkscape - Ghent https://tess.elixir-europe.org/events/initiation-gimp-and-inkscape-ghent-bd18f6fb-c469-418d-8b9e-bd73e73ce890 2017-05-09 09:00:00 UTC 2017-05-09 17:00:00 UTC VIB Bioinformatics Core Bio-Accelerator Meeting Centre, Ghent, Belgium Bio-Accelerator Meeting Centre Ghent Belgium 9052 [] [] [] [] [] []
  • Bioschemas Agreement Meeting

    24 - 26 May 2017

    Hinxton, United Kingdom

    Bioschemas Agreement Meeting https://tess.elixir-europe.org/events/bioschemas-agreement-meeting On Wednesday 24 May we expect to recap the objectives and outcomes of the project and update on progress made during/after the previous meeting. On Thursday 25 May we will work in groups to finalise a first draft of our bioschemas types. We will also revise dependencies and relationship among our types and how this could affect our schema proposals. On Friday 26 May we will devise action plans for implementing the provisional agreement and we will discuss priority activities for 2018. 2017-05-24 13:00:00 UTC 2017-05-26 13:00:00 UTC EBI, Hinxton, United Kingdom EBI Hinxton United Kingdom [] [] [] workshops_and_courses [] []
  • ELIXIR BrAPI BYOD/hackathon

    30 May - 1 June 2017

    Ghent, Belgium

    ELIXIR BrAPI BYOD/hackathon https://tess.elixir-europe.org/events/elixir-brapi-byod-hackathon An ELIXIR BrAPI BYOD/hackathon, organized by ELIXIR Belgium and ELIXIR NL will take place in Ghent, Belgium, May 30 - June 1.  The main aim of this event is to showcase the potential of FAIR data in the context of plant research and a hackathon on how to make the interoperability platform within the plant domain (BrAPI) FAIR reusing the general accepted MIAPPE standards and assessing data validation with ISA-TOOLS. Further details to follow. 2017-05-30 09:00:00 UTC 2017-06-01 00:00:00 UTC Ghent, Belgium Ghent Belgium [] [] [] workshops_and_courses [] []
  • ELIXIR BrAPI BYOD/hackathon

    30 May - 1 June 2017

    Ghent, Belgium

    ELIXIR BrAPI BYOD/hackathon https://tess.elixir-europe.org/events/elixir-brapi-byod-hackathon-de3b07f6-7334-47a4-a8ee-87d76840aa15 An ELIXIR BrAPI BYOD/hackathon, organized by ELIXIR Belgium and ELIXIR NL will take place in Ghent, Belgium, May 30 - June 1.  The main aim of this event is to showcase the potential of FAIR data in the context of plant research and a hackathon on how to make the interoperability platform within the plant domain (BrAPI) FAIR reusing the general accepted MIAPPE standards and assessing data validation with ISA-TOOLS. Further details to follow.   2017-05-30 09:00:00 UTC 2017-06-01 00:00:00 UTC Ghent, Belgium Ghent Belgium Plant biology [] [] [] workshops_and_courses [] []
  • ELIXIR Green Use case BYOD: BrAPI

    30 May - 1 June 2017

    Ghent, Belgium

    ELIXIR Green Use case BYOD: BrAPI https://tess.elixir-europe.org/events/elixir-green-use-case-byod-brapi ELIXIR BrAPI BYOD/hackathon, organized by ELIXIR Belgium and ELIXIR NL.   The BYOD will take place in Ghent, Belgium, 30 May - 1 June. The main aim of this event is to showcase the potential of FAIR data in the context of plant research and a hackathon on how to make the Interoperability Platform within the plant domain (BrAPI) FAIR reusing the general accepted MIAPPE standards and assessing data validation with ISA-TOOLS.   Four stages are defined to reach this goal. The outline of the process is as follows: Semantically model plant (breeding) concepts / type them in line with MIAPPE  Design and implement an FAIR data point frontend for BrAPI rest-based endpoints re-using the models developed under 1. Validate output of BrAPI endpoints (2) with the defined semantic typing (1) re-using ISA-TOOLS Write a manuscript. 2017-05-30 09:30:00 UTC 2017-06-01 17:00:00 UTC Ghent, Belgium Ghent Belgium [] [] [] workshops_and_courses [] []
  • Protein Structure Analysis

    15 June 2017

    Ghent, Belgium

    Elixir node event
    Protein Structure Analysis https://tess.elixir-europe.org/events/protein-structure-analysis-f095d4f5-e03b-4b1d-9f38-38dff017174a b'\r\n\r\n\n \r\n\r\n\n \r\n\r\n\n' 2017-06-15 09:30:00 UTC 2017-06-15 17:00:00 UTC ELIXIR Belgium VIB-UGent reseach Building FSVM PC room V114 (first floor), Ghent, Belgium VIB-UGent reseach Building FSVM PC room V114 (first floor) Ghent Belgium 9052 [] [] [] [] [] []
  • Foundation skills for HPC in computational biomolecular research

    3 - 7 July 2017

    Hinxton, United Kingdom

    Foundation skills for HPC in computational biomolecular research https://tess.elixir-europe.org/events/foundation-skills-for-hpc-in-computational-biomolecular-research This 5-day BioExcel Summer School will use project-based learning to empower life scientists to get the most out of using computers. Using example problems and challenges that life-scientists will come across in their day-to-day work, e.g. obtaining data, installing software, cleaning data, analysing data, this course will help participants gain the foundational computational skills needed to move into the domain of high-end computing. 2017-07-03 16:33:00 UTC 2017-07-07 14:00:00 UTC BioExcel EMBL-EBI South Building and ELIXIR Hub, Hinxton, United Kingdom EMBL-EBI South Building and ELIXIR Hub Hinxton Cambridgeshire United Kingdom Computational biology EMBL-EBI Vera Matser - matser@ebi.ac.uk [] [] workshops_and_courses [] []
  • Functional Plant Bioinformatics - PLAZA

    14 - 15 September 2017

    Ghent, Belgium

    Elixir node event
    Functional Plant Bioinformatics - PLAZA https://tess.elixir-europe.org/events/functional-plant-bioinformatics-plaza 2017-09-14 10:00:00 UTC 2017-09-15 17:00:00 UTC VIB Bioinformatics Core Bio-Accelerator Meeting Center, Ghent, Belgium Bio-Accelerator Meeting Center Ghent Belgium 9052 [] [] [] [] [] []
  • Variant effect prediction

    31 October - 1 November 2017

    Breda, Netherlands

    Elixir node event
    Variant effect prediction https://tess.elixir-europe.org/events/variant-effect-prediction-773b4e41-8804-45f7-bf9d-a46324d598cf This course is organised in collaboration with Dr. J.T. den Dunnen, Human Genetics & Clinical Genetics, LUMC, Leiden Aim of the course: DNA sequencing, incl. NGS, is a standard technology used in most modern laboratories. When the focus is on… The post Variant effect prediction appeared first on Dutch Techcentre for Life Sciences. 2017-10-31 09:00:00 UTC 2017-11-01 00:00:00 UTC Breda, Netherlands, Breda, Netherlands Breda, Netherlands Breda Netherlands [] [] [] workshops_and_courses [] []
  • Variant effect prediction

    31 October - 3 November 2017

    Breda, Netherlands

    Variant effect prediction https://tess.elixir-europe.org/events/variant-effect-prediction The "Variant Effect Prediction" course has been developed to show what one can do to predict the consequences on DNA, RNA and protein level, i.e. to classify the variants. 2017-10-31 15:19:00 UTC 2017-11-03 15:19:00 UTC Avans Hogeschool Lovensdijkstraat, Lovensdijkstraat, Breda, Netherlands Lovensdijkstraat, Lovensdijkstraat Breda Nederland Netherlands 4818 AJ Avans Hogeschool Ms. Sari van Heel: si.vanheel-vauhkala@avans.nl [] Technicians workshops_and_courses registration_of_interest SequencingDNA RNA
  • BioData World Congress 2017

    2 - 3 November 2017

    Hinxton, United Kingdom

    BioData World Congress 2017 https://tess.elixir-europe.org/events/biodata-world-congress-2017 Held with the support of the Sanger Institute, ELIXIR, EMBL-EBI, the Global Alliance for Genomics & Health and The Pistoia Alliance, the BioData World Congress aims to showcase innovation, demonstrate success and break through the obstacles and barriers to ensure that the innovations in genomics get to the patient with speed and efficiency. It will offer a a mixture of keynote sessions, roundtables, focused work tracks, site visits, product demonstrations and networking parties.   2017-11-02 09:00:00 UTC 2017-11-03 17:15:00 UTC Wellcome Genome Campus, Hinxton, United Kingdom Wellcome Genome Campus Hinxton United Kingdom [] [] [] meetings_and_conferences [] []
  • BioData World Congress 2017

    2 - 3 November 2017

    Hinxton, United Kingdom

    Elixir node event
    BioData World Congress 2017 https://tess.elixir-europe.org/events/biodata-world-congress-2017-fc8a1ad2-1e06-416e-bcfa-47a73d244793 BioData World Congress 2017 will bring together academia, industry and healthcare to discuss and debate how to come together to improve efficiencies within bio IT and biodata to the benefit of patients worldwide. 2017-11-02 10:00:00 UTC 2017-11-03 16:00:00 UTC Wellcome Genome Campus Conference Centre, Hinxton, United Kingdom Wellcome Genome Campus Conference Centre Hinxton United Kingdom CB10 1RQ [] [] [] [] [] HDRUK
  • Analysis of metabolome data

    15 January 2018

    Ghent, Belgium

    Elixir node event
    Analysis of metabolome data https://tess.elixir-europe.org/events/analysis-of-metabolome-data This training is intended for people who have a basic knowledge of R. Participants who have never worked with R should first follow the course Basic statistics in R.  The morning session will handle differences affecting data handling between GC-MS and LC-MS.  2018-01-15 09:30:00 UTC 2018-01-15 17:00:00 UTC VIB Bioinformatics Core Bio-Accelerator, Ghent, Belgium Bio-Accelerator Ghent Belgium 9052 [] [] [] [] [] []
  • Quick introduction to RStudio

    23 January 2018

    Ghent, Belgium

    Elixir node event
    Quick introduction to RStudio https://tess.elixir-europe.org/events/quick-introduction-to-rstudio 2018-01-23 10:00:00 UTC 2018-01-23 12:00:00 UTC ELIXIR Belgium VIB-UGent Research Building PC room V114, Ghent, Belgium VIB-UGent Research Building PC room V114 Ghent Belgium 9052 [] [] [] [] [] []
  • Ensembl Browser Workshop, Bogota, 11 February 2018

    11 February 2018

    Bogota, Colombia

    Elixir node event
    Ensembl Browser Workshop, Bogota, 11 February 2018 https://tess.elixir-europe.org/events/ensembl-browser-workshop-bogota-11-february-2018 Work with the Ensembl Outreach team to get to grips with the Ensembl browser, accessing gene, variation, comparative genomics and regulation data, and mine these data with BioMart. 2018-02-11 09:00:00 UTC 2018-02-11 17:00:00 UTC Universidad de los Andes - UniAndes, Bogota, Colombia Universidad de los Andes - UniAndes Bogota Colombia 111711 [] Astrid Gall [] [] [] [] []
  • Introduction to tidyverse R in Ghent

    7 March 2018

    Ghent, Belgium

    Elixir node event
    Introduction to tidyverse R in Ghent https://tess.elixir-europe.org/events/introduction-to-tidyverse-r-in-ghent The use of R in the data science field has increased enormously in the last few years. One very useful toolkit for a wide variety of analyses is the ‘tidyverse’: a collection of R-packages used for data manipulation, exploration and visualisation that share a common design philosophy. Tidyverse packages are intended to make statisticians and data scientists more productive by guiding them through workflows that facilitate communication, and result in reproducible work products. This is a four hour workshop, were you will learn: The difference between tidy and untidy data How to create tidy datasets and manipulate them using the main tidyr and dplyr verbs Integrate data visualization into your workflow using ggplot2 Use tidyverse functions to research biological problems   Requirements 2018-03-07 13:00:00 UTC 2018-03-07 17:00:00 UTC ELIXIR Belgium Campus: Campus Sterre S8 Victor Van Straelen - (wing B) - ground floor PC-room 0.1, Ghent, Belgium Campus: Campus Sterre S8 Victor Van Straelen - (wing B) - ground floor PC-room 0.1 Ghent Belgium 9000 [] [] [] [] [] []
  • Introduction to Biopython

    29 - 30 March 2018

    Ghent, Belgium

    Elixir node event
    Introduction to Biopython https://tess.elixir-europe.org/events/introduction-to-biopython ​​Understand what Biopython is and what it can do. Learn how to get Biopython running. Learn how to retrieve data records from NCBI. Learn how to read and write sequence files. Learn how to run BLAST from Python and read the results. Learn how to read and write phylogenetic tree files. Learn how to read and write 3D structure files. Learn how to use the Biopython documentation, examples, and where to find help. Understand what alternatives to Biopython exist and what they can do.   Biopython is the best-known Python library to process biological data. This training is aimed to empower you to use Biopython to make your research more efficient. The first day of the training is to give an overview of Biopython. You are going to start with your first steps in Biopython on the command line. Afterwards, you will take a tour of the most important components: sequences, NCBI queries, BLAST, trees, and 3D structures. You will try each of these modules on practical examples. Please don't hesitate to ask questions about Python basics or particular data formats (e.g. XML or NGS data). The second day of the training is to broaden your perspective: What other features does the library have? How can you use the documentation effectively? What is Biopython not capable of?  What can I do to visualize my data? Are there alternatives? If you have your own data that you would like to work on with Biopython in more detail, there is room for that. For me, the most important thing is to identify concrete Python modules and functions that help you to get your research done. Participants are encouraged to submit a description of their research topic and/or the questions they would like to answer with Biopython. Additionally, participants can bring their own data that they would like to process in Python to the training. 2018-03-29 09:30:00 UTC 2018-03-30 17:00:00 UTC VIB Bioinformatics Core BioAccelerator, Ghent, Belgium BioAccelerator Ghent Belgium 9052 [] [] [] [] [] []
  • International Post-graduate Course Variant Effect Prediction: Ensembl genome browser & Variant Effect Predictor (VEP) modules, Breda, The Netherlands, 10 - 13 April 2018

    11 - 12 April 2018

    Breda, Netherlands

    Elixir node event
    International Post-graduate Course Variant Effect Prediction: Ensembl genome browser & Variant Effect Predictor (VEP) modules, Breda, The Netherlands, 10 - 13 April 2018 https://tess.elixir-europe.org/events/international-post-graduate-course-variant-effect-prediction-ensembl-genome-browser-variant-effect-predictor-vep-modules-breda-the-netherlands-10-13-april-2018 Work with the Ensembl Outreach team to get to grips with the Ensembl browser, accessing gene and variation data, and use the Variant Effect Predictor. 2018-04-11 12:00:00 UTC 2018-04-12 17:15:00 UTC Avans Hogeschool Breda, Breda, Netherlands Avans Hogeschool Breda Breda Netherlands 4800 [] Astrid Gall [] [] [] [] HDRUK
  • My code changed and using Git I know where and when

    24 April 2018

    Ghent, Belgium

    Elixir node event
    My code changed and using Git I know where and when https://tess.elixir-europe.org/events/my-code-changed-and-using-git-i-know-where-and-when 2018-04-24 15:00:00 UTC 2018-04-24 18:00:00 UTC VIB Bioinformatics Core Ghent VIB-UGent Research Building LEAF room (E124) right side of the building, first floor, Ghent, Belgium Ghent VIB-UGent Research Building LEAF room (E124) right side of the building, first floor Ghent Belgium 9052 [] [] [] [] [] []
  • PhenoMeNal Gateway: Portal to metabolomics data analysis in the cloud

    6 - 8 June 2018

    Hinxton, United Kingdom

    Elixir node event
    PhenoMeNal Gateway: Portal to metabolomics data analysis in the cloud https://tess.elixir-europe.org/events/phenomenal-gateway-portal-to-metabolomics-data-analysis-in-the-cloud This course will provide an introduction to metabolomics data analysis in a cloud computing environment, using infrastructure developed by the PhenoMeNal project. 2018-06-06 09:30:00 UTC 2018-06-08 13:00:00 UTC Tennis Court Suite, Wellcome Genome Campus, Hinxton, United Kingdom Tennis Court Suite, Wellcome Genome Campus Hinxton United Kingdom CB10 1SD [] Frank O’Donnell [] [] [] [] []
  • A tour of machine learning - classification

    12 June 2018

    Ghent, Belgium

    Elixir node event
    A tour of machine learning - classification https://tess.elixir-europe.org/events/a-tour-of-machine-learning-classification ok Python Numpy/Pandas 2018-06-12 09:30:00 UTC 2018-06-12 17:00:00 UTC VIB Bioinformatics Core Bio-Accelerator, Ghent, Belgium Bio-Accelerator Ghent Belgium 9052 [] [] [] [] [] []
  • Galaxy Training: introduction to Galaxy

    26 June 2018

    Ghent, Belgium

    Elixir node event
    Galaxy Training: introduction to Galaxy https://tess.elixir-europe.org/events/galaxy-training-introduction-to-galaxy ​What is Galaxy? Galaxy software framework is an open-source application. It is a system that enables researchers without informatics expertise to perform computational biology analyses through the web. Participants Biologists and other life science researchers who would like and introduction… The post Galaxy Training: introduction to Galaxy appeared first on Dutch Techcentre for Life Sciences. 2018-06-26 09:00:00 UTC 2018-06-26 00:00:00 UTC Ghent, Belgium, Ghent, Belgium Ghent, Belgium Ghent Belgium [] [] [] workshops_and_courses [] []
  • Implementation of Data Management Plans & Data Stewardship in practice

    11 September 2018

    Athens, Greece

    Elixir node event
    Implementation of Data Management Plans & Data Stewardship in practice https://tess.elixir-europe.org/events/implementation-of-data-management-plans-data-stewardship-in-practice ELIXIR workshop “Implementation of Data Management Plans & Data Stewardship in practice”, taking place on Sept 11, 2018 as part of the ECCB2018 in Athens, Greece. 2018-09-11 17:30:00 UTC 2018-09-11 19:00:00 UTC Hellenic Society for Computational Biology Stavros Niarchos Foundation Cultural Center, 364, Leoforos Andrea Siggrou, Athens, Greece Stavros Niarchos Foundation Cultural Center, 364, Leoforos Andrea Siggrou Athens Attica Greece Data management Data submission, annotation and curation Stavros Niarchos Foundation Cultural Center [] bioinformaticiansdata stewards 30 workshops_and_courses registration_of_interest data managementdata stewardshipeLearningEeLP
  • Ontological Annotation of Datasets: "1st NanoCommons Hackathon"

    9 October 2018

    Athens, Greece

    Ontological Annotation of Datasets: "1st NanoCommons Hackathon" https://tess.elixir-europe.org/events/ontological-annotation-of-datasets The participants will work using their own or mock datasets and search through established ontologies (e.g. eNanoMapper Ontology) for ontological annotations. The participants will also learn how to prepare electronic files (e.g. JSON) containing the raw data and the ontological metadata. 2018-10-09 09:00:00 UTC 2018-10-09 00:00:00 UTC Athens, Greece Athens Greece Ontology and terminology [] [] Biologists workshops_and_courses [] nanotoxicologyresearch dataontologyontologies, enanomapper
  • Public proteomics data reprocessing and the Tabloid Proteome

    10 October 2018

    Ghent, Belgium

    Elixir node event
    Public proteomics data reprocessing and the Tabloid Proteome https://tess.elixir-europe.org/events/public-proteomics-data-reprocessing-and-the-tabloid-proteome 2018-10-10 09:30:00 UTC 2018-10-10 17:00:00 UTC ELIXIR Belgium VIB-UGent Research Building LEAF room (E124) right side of the building, first floor, Ghent, Belgium VIB-UGent Research Building LEAF room (E124) right side of the building, first floor Ghent Belgium 9052 [] [] [] [] [] []
  • Computing skills for reproducible research: Software Carpentry

    24 - 25 October 2018

    Ghent, Belgium

    Elixir node event
    Computing skills for reproducible research: Software Carpentry https://tess.elixir-europe.org/events/computing-skills-for-reproducible-research-software-carpentry After the workshop, participants will be able to: write and organise their own scripts for data analysis use version control to keep track of, and revert changes to their files run scripts from the command line 2018-10-24 09:00:00 UTC 2018-10-25 17:00:00 UTC ELIXIR Belgium Ghent, Ghent, Belgium Ghent Ghent East Flanders Belgium 9000 [] [] Researchers [] [] []
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