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6 events found

Scientific topics: Metagenomics  or RNA-Seq 

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City: Bogota  or Athens  or Brisbane  or Barcelona  or Lisbon  or Suzhou  or Oslo  or Oeiras 

  • Chromosome structure determination using modelling and Hi-C data

    25 - 28 November 2014

    Oeiras, Portugal

    Chromosome structure determination using modelling and Hi-C data https://tess.elixir-europe.org/events/chromosome-structure-determination-using-modelling-and-hi-c-data 2014-11-25 09:00:00 UTC 2014-11-28 00:00:00 UTC GTPB Oeiras, Portugal Oeiras Portugal Metagenomics Bioinformatics [] [] [] workshops_and_courses [] []
  • Host-microbe symbioses – old friends and foes

    19 July - 1 August 2015

    Lisbon, Poland

    Host-microbe symbioses – old friends and foes https://tess.elixir-europe.org/events/host-microbe-symbioses-a-old-friends-and-foes 2015-07-19 01:00:00 UTC 2015-08-01 01:00:00 UTC Lisbon, Poland Lisbon Poland Physiology Metagenomics [] [] [] workshops_and_courses [] []
  • ADER17 - Analysis of Differential Expression with RNAseq

    17 April 2017

    Oeiras, Portugal

    Elixir node event
    ADER17 - Analysis of Differential Expression with RNAseq https://tess.elixir-europe.org/events/ader17-analysis-of-differential-expression-with-rnaseq    IMPORTANT DATES for this Course   Deadline for applications: April 10th 2017   Course dates: April 17th - April 20th 2017 Candidates with adequate profile will be accepted in the next 72 hours after the application, until we reach 20 participants. Course description Overview High-throughput technologies allow us to detect transcripts present in a cell or tissue. This course covers practical aspects of the analysis of differential gene expression by RNAseq. Participants will be presented with real world examples and work with them in the training room, covering all the steps of RNAseq analysis, from planning the gathering of sequence data to the generation of tables of differentially expressed gene lists and visualization of results. We we will also cover some of the initial steps of secondary analysis, such as functional enrichment of the obtained gene lists. Target Audiences Life Scientists who want to be able to use NGS data to evaluate gene expression (RNAseq). Computational researchers that wish to get acquainted with the concepts and methodologies used in RNAseq are also welcome. Participants are encouraged to bring their own data and will have the opportunity to apply the concepts learned in the course. Pre-requisites Familiarity with elementary statistics and a few basics of scripting in R. Please have a look at the following resources and gauge your ability to use R in statitics at the basic level: Introduction to Data Science with R Videos from Coursera's four week course in R Statistics at Square One - BMJ Basic Unix command line skills, such as being able to navigate in a directory tree and copy files. See, for example, "Session 1" of the Software Carpentry training for a Unix introduction (Shell-novice material from the Software Carpentry Foundation). 2017-04-17 07:30:00 UTC 2017-04-17 07:30:00 UTC Pedro Fernandes Instituto Gulbenkian de Ciência, Oeiras, Portugal Instituto Gulbenkian de Ciência Oeiras Portugal 1000-029 Transcriptomics RNA-Seq [] bicourses@igc.gulbenkian.pt [] [] 20 workshops_and_courses registration_of_interest []
  • NeLS hands-on workshop

    3 June 2019

    Oslo, Norway

    Elixir node event
    NeLS hands-on workshop https://tess.elixir-europe.org/events/nels-hands-on-workshop The sixth in a series of hands-on bioinformatics workshops organized in Oslo by ELIXIR. The topic is on how you can use the Norwegian e-Infrastructure for Life Sciences (NeLS) (nels.bioinfo.no) to store and share data, and to run analyses via customizable genomics pipelines (Galaxy). Together, we will go through a complete RNA sequencing analysis pipeline. 2019-06-03 10:00:00 UTC 2019-06-03 14:00:00 UTC ELIXIR UiO node Ole-Johan Dahls hus, 23B, Gaustadalléen, Oslo, Norway Ole-Johan Dahls hus, 23B, Gaustadalléen Oslo Oslo kommune Norway 0373 Data management Bioinformatics RNA-Seq university of Oslo [] PhD studentspost-docs 20 workshops_and_courses first_come_first_served []
  • NeLS hands-on bioinformatics workshop

    27 November 2019

    Oslo, Norway

    NeLS hands-on bioinformatics workshop https://tess.elixir-europe.org/events/nels-hands-on-bioinformatics-workshop We are pleased to announce the seventh in a series of hands-on bioinformatics workshops organised in Oslo by ELIXIR. The topic is on how you can use the Norwegian e-Infrastructure for Life Sciences (NeLS) (nels.bioinfo.no) to store and share data, and to run analyses via customisable genomics pipelines (Galaxy). Together, we will go through a complete RNA sequencing analysis pipeline. 2019-11-27 10:00:00 UTC 2019-11-27 14:00:00 UTC ELIXIR Norway, Oslo node Institute of Informatics, University of Oslo, Ole-Johan Dahls hus, 23B, Gaustadalléen, Oslo, Norway Institute of Informatics, University of Oslo, Ole-Johan Dahls hus, 23B, Gaustadalléen Oslo Oslo kommune Norway RNA-Seq [] [] [] workshops_and_courses [] []
  • Microbiome Visualization with Biome-Shiny

    31 January 2020

    Oeiras, Portugal

    Elixir node event
    Microbiome Visualization with Biome-Shiny https://tess.elixir-europe.org/events/microbiome-visualization-with-biome-shiny BioData.pt Crash Course: Microbiome Visualization with Biome-Shiny is an introductory one-day workshop seeking to provide users with the knowledge to create, analyze and visualize microbiome data. The course consists of two parts: the first part, is an introduction to, and hands-on demonstration of, the DADA2 pipeline, which will be used to process a training dataset into a file that can be analyzed through the Biome-Shiny tool; the second part, employs the Biome-Shiny GUI to explore the obtained dataset's microbial community composition, as well as the alpha- and beta-diversity of the dataset, and download their results for later use. By the end of this course, participants should be able to apply the DADA2 algorithm to process their own sequenced reads, as well as employ Biome-Shiny as a GUI-based solution to explore their data and produce a final report. 2020-01-31 09:30:00 UTC 2020-01-31 17:30:00 UTC BioData.pt / Instituto Gulbenkian de Ciência Instituto Gulbenkian de Ciência (IGC), 6, Rua Quinta Grande, Oeiras, Portugal Instituto Gulbenkian de Ciência (IGC), 6, Rua Quinta Grande Oeiras Portugal Metagenomics Instituto Gulbenkian de Ciência, Biodata.pt - Elixir's portuguese node of the european projec info@biodata.pt [] PhD students and post-docs who want to learn the basics of microbiome analysis in Bioinformatics, and have little knowledge of programming. workshops_and_courses first_come_first_served []

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