Chromosome structure determination using modelling and Hi-C data
25 - 28 November 2014
Oeiras, PortugalChromosome structure determination using modelling and Hi-C data http://gtpb.igc.gulbenkian.pt/bicourses/CSDM14/ https://tess.elixir-europe.org/events/chromosome-structure-determination-using-modelling-and-hi-c-data 2014-11-25 09:00:00 UTC 2014-11-28 00:00:00 UTC GTPB Oeiras, Portugal Oeiras Portugal Metagenomics Bioinformatics    workshops_and_courses  
Host-microbe symbioses â old friends and foes
19 July - 1 August 2015
Lisbon, PolandHost-microbe symbioses â old friends and foes http://www.euca-excellence.eu/index.php/current-and-future-courses/lisbon-2015-evolutionary-biology https://tess.elixir-europe.org/events/host-microbe-symbioses-a-old-friends-and-foes 2015-07-19 01:00:00 UTC 2015-08-01 01:00:00 UTC Lisbon, Poland Lisbon Poland Physiology Metagenomics    workshops_and_courses  
Differential Gene Expression Analysis with R (microarray and NGS)
25 May 2016
Brisbane, AustraliaDifferential Gene Expression Analysis with R (microarray and NGS) http://www.qfab.org/event/workshop-analysis-of-microarray-and-ngs-data-with-r-2-2/ https://tess.elixir-europe.org/events/differential-gene-expression-analysis-with-r-microarray-and-ngs This hands-on workshop will introduce users of the R software environment to the specific skills and applications used in the analysis of microarray and next-generation sequencing (NGS) data. Practical exercises will include quality control and normalisation of data for differential gene expression, and linking genomic information to external public datasets. Recommended participants Biologists and bioinformaticians wishing to use R for RNA expression analysis. Prior expertise with R and the command line interface is required, to a level equivalent of that provided by the QFAB workshop “Introduction to R”. What will I learn? During this course you will learn about: Pre-processing and quality control of microarray and RNA-Seq data The use of R packages for the identification of differentially-expressed genes from expression data Systems biology interpretation of gene lists using pathway analysis Integration of expression and genome data with Ensembl databases After this course you should be able to: Import Affymetrix CEL files to R as data objects Carry out standard QC tests on microarray and RNA-Seq datasets Use the limma-voom R package to produce lists of differentially expressed genes between pairs of samples Identify over-represented gene ontology categories in gene lists using the GOStats package 2016-05-25 09:00:00 UTC 2016-05-25 00:00:00 UTC University of Queensland, Brisbane, Australia University of Queensland Brisbane Australia Sequencing Gene expression Data architecture, analysis and design    workshops_and_courses  ABRQFABR
Microbiome Visualization with Biome-Shiny
31 January 2020
Oeiras, PortugalMicrobiome Visualization with Biome-Shiny https://biodata.pt/event/biodatapt-crash-course-microbiome-visualization-biome-shiny https://tess.elixir-europe.org/events/microbiome-visualization-with-biome-shiny BioData.pt Crash Course: Microbiome Visualization with Biome-Shiny is an introductory one-day workshop seeking to provide users with the knowledge to create, analyze and visualize microbiome data. The course consists of two parts: the first part, is an introduction to, and hands-on demonstration of, the DADA2 pipeline, which will be used to process a training dataset into a file that can be analyzed through the Biome-Shiny tool; the second part, employs the Biome-Shiny GUI to explore the obtained dataset's microbial community composition, as well as the alpha- and beta-diversity of the dataset, and download their results for later use. By the end of this course, participants should be able to apply the DADA2 algorithm to process their own sequenced reads, as well as employ Biome-Shiny as a GUI-based solution to explore their data and produce a final report. 2020-01-31 09:30:00 UTC 2020-01-31 17:30:00 UTC BioData.pt / Instituto Gulbenkian de Ciência Instituto Gulbenkian de Ciência (IGC), 6, Rua Quinta Grande, Oeiras, Portugal Instituto Gulbenkian de Ciência (IGC), 6, Rua Quinta Grande Oeiras Portugal Metagenomics Instituto Gulbenkian de Ciência, Biodata.pt - Elixir's portuguese node of the european projec email@example.com  PhD students and post-docs who want to learn the basics of microbiome analysis in Bioinformatics, and have little knowledge of programming. workshops_and_courses first_come_first_served 
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