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6 events found

Scientific topics: Metagenomics  or Gene expression 

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City: Bogota  or Athens  or Brisbane  or Barcelona  or Lisbon  or Suzhou  or Oslo  or Cambridge 

  • Host-microbe symbioses – old friends and foes

    19 July - 1 August 2015

    Lisbon, Poland

    Host-microbe symbioses – old friends and foes https://tess.elixir-europe.org/events/host-microbe-symbioses-a-old-friends-and-foes 2015-07-19 01:00:00 UTC 2015-08-01 01:00:00 UTC Lisbon, Poland Lisbon Poland Physiology Metagenomics [] [] [] workshops_and_courses [] []
  • Differential Gene Expression Analysis with R (microarray and NGS)

    25 May 2016

    Brisbane, Australia

    Differential Gene Expression Analysis with R (microarray and NGS) https://tess.elixir-europe.org/events/differential-gene-expression-analysis-with-r-microarray-and-ngs This hands-on workshop will introduce users of the R software environment to the specific skills and applications used in the analysis of microarray and next-generation sequencing (NGS) data. Practical exercises will include quality control and normalisation of data for differential gene expression, and linking genomic information to external public datasets. Recommended participants Biologists and bioinformaticians wishing to use R for RNA expression analysis. Prior expertise with R and the command line interface is required, to a level equivalent of that provided by the QFAB workshop “Introduction to R”. What will I learn? During this course you will learn about: Pre-processing and quality control of microarray and RNA-Seq data The use of R packages for the identification of differentially-expressed genes from expression data Systems biology interpretation of gene lists using pathway analysis Integration of expression and genome data with Ensembl databases After this course you should be able to: Import Affymetrix CEL files to R as data objects Carry out standard QC tests on microarray and RNA-Seq datasets Use the limma-voom R package to produce lists of differentially expressed genes between pairs of samples Identify over-represented gene ontology categories in gene lists using the GOStats package 2016-05-25 09:00:00 UTC 2016-05-25 00:00:00 UTC University of Queensland, Brisbane, Australia University of Queensland Brisbane Australia Sequencing Gene expression Data architecture, analysis and design [] [] [] workshops_and_courses [] ABRQFABR
  • EMBL-EBI: Transcriptomics Data and Tools

    14 February 2017

    Cambridge, United Kingdom

    Elixir node event
    EMBL-EBI: Transcriptomics Data and Tools https://tess.elixir-europe.org/events/embl-ebi-transcriptomics-data-and-tools-34d01da3-3912-495d-9ad6-a93fae207c1f This workshop will give an introduction to the functional genomics resources provided by EMBL-EBI and hands-on practical experience of searching and accessing appropriate data and information. The session will also cover data submission to [ArrayExpress](https://www.ebi.ac.uk/arrayexpress/) using Annotare. Also note: This event is part of a series of short introductions focusing on EMBL-EBI resources. If you want to learn more about these separate training events, see the Related Courses section below. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=1980346&&course-title=EMBL-EBI:%20Transcriptomics%20Data%20and%20Tools).'' 2017-02-14 09:30:00 UTC 2017-02-14 13:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Gene expression Transcriptomics Bioinformatics University of Cambridge Bioinformatics Training [] This workshop is aimed at researchers who wish to use and submit functional genomics data. This workshop will not however cover the analysis of such data.Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • EMBL-EBI: Array Express and Expression Atlas

    7 February 2018

    Cambridge, United Kingdom

    Elixir node event
    EMBL-EBI: Array Express and Expression Atlas https://tess.elixir-europe.org/events/embl-ebi-transcriptomics-data-and-tools-44bc0035-2317-4c69-bbb8-25571987efb1 This workshop is designed for researchers interested in learning about functional genomics data, how to access, retrieve and use the data from [ArrayExpress](https://www.ebi.ac.uk/arrayexpress/) and hands-on experience in using [Expression Atlas](http://www.ebi.ac.uk/gxa/home/), a resource to find information about gene and protein expression across species and biological conditions such as different tissues, cell types, developmental stages and diseases among others. This will include an overview on how gene expression data is curated and analysed in Expression Atlas and a practical activity to demonstrate how to access and visualise gene expression analysis results. These activities should help you answer questions such as "where is my favourite gene expressed?" or "how does its expression change in a disease?". Also note: This event is part of a series of short introductions focusing on EMBL-EBI resources. If you want to learn more about these separate training events, see the [[#Related|Related Courses]] section below. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=2240490&&course-title=EMBL-EBI:%20Array%20Express%20and%20Expression%20Atlas).'' 2018-02-07 14:00:00 UTC 2018-02-07 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Gene expression Transcriptomics Bioinformatics University of Cambridge Bioinformatics Training [] The module is suitable for researchers interested in gene expression analysis and visualisationGraduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • EMBL-EBI: Transcriptomics Data and Tools

    17 May 2019

    Cambridge, United Kingdom

    Elixir node event
    EMBL-EBI: Transcriptomics Data and Tools https://tess.elixir-europe.org/events/embl-ebi-transcriptomics-data-and-tools-34904940-1592-4101-bfff-183d742be05c This workshop is designed for researchers interested in learning about functional genomics data, how to access, retrieve and use the data from [ArrayExpress](https://www.ebi.ac.uk/arrayexpress/) and hands-on experience in using [Expression Atlas](http://www.ebi.ac.uk/gxa/home/), a resource to find information about gene and protein expression across species and biological conditions such as different tissues, cell types, developmental stages and diseases among others. This will include an overview on how gene expression data is curated and analysed in Expression Atlas and a practical activity to demonstrate how to access and visualise gene expression analysis results. These activities should help you answer questions such as "where is my favourite gene expressed?" or "how does its expression change in a disease?". Also note: This event is part of a series of short introductions focusing on EMBL-EBI resources. If you want to learn more about these separate training events, see the [[#Related|Related Courses]] section below. The training room is located on the first floor and there is currently no wheelchair or level access available to this level. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=2851681&course-title=EMBL-EBI:%20Transcriptomics%20Data%20Tools).'' 2019-05-17 08:30:00 UTC 2019-05-17 16:15:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Gene expression Transcriptomics Bioinformatics University of Cambridge Bioinformatics Training [] The module is suitable for researchers interested in gene expression analysis and visualisationGraduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Introduction to metagenomics (ONLINE LIVE TRAINING)

    6 - 7 May 2020

    Cambridge, United Kingdom

    Elixir node event
    Introduction to metagenomics (ONLINE LIVE TRAINING) https://tess.elixir-europe.org/events/introduction-to-metagenomics PLEASE NOTE that until further notice, due to the evolving situation with Coronavirus no courses will be offered as classroom based at the Training Facility. The Bioinformatics Team be teaching the course live online, with tutors available to help you work through the course material on a personal copy of the course environment. We will be aiming to simulate the classroom experience as closely as possible, with opportunities for one-to-one discussion with tutors and a focus on interactivity throughout. This two days course will focus on the theory and applications of metagenomics, for the analysis of complex microbiomes (microbial communities). The course will include theoretical (~40%) and practical (~60%) training. We will start with the fastest, simplest and cheapest amplicon based methods and will go up to the Hi-C metagenomics methods that give highly detailed results on the complex microbial communities. The practical component will cover bioinformatics analysis of metagenomics. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to Book or register Interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=3331686&course-title=Introduction%20to%20metagenomics).'' 2020-05-06 08:30:00 UTC 2020-05-07 15:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Data mining Data visualisation Metagenomics Bioinformatics University of Cambridge Bioinformatics Training [] The course is aimed at biologists interested in microbiologyprokaryotic genomicsanalysis of complex microbiomes and antimicrobial resistance.Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK

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