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14 events found

Event types: Workshops and courses 

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Country: Poland  or Australia 

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City: Bogota  or Athens  or Brisbane  or Barcelona  or Lisbon  or Oslo 

  • Host-microbe symbioses – old friends and foes

    19 July - 1 August 2015

    Lisbon, Poland

    Host-microbe symbioses – old friends and foes https://tess.elixir-europe.org/events/host-microbe-symbioses-a-old-friends-and-foes 2015-07-19 01:00:00 UTC 2015-08-01 01:00:00 UTC Lisbon, Poland Lisbon Poland Physiology Metagenomics [] [] [] workshops_and_courses [] []
  • Data Interpretation and Reporting with R

    11 May 2016

    Brisbane, Australia

    Data Interpretation and Reporting with R https://tess.elixir-europe.org/events/data-interpretation-and-reporting-with-r This hands-on workshop will introduce users of the R software environment to the techniques involved in generating reproducible, dynamic data analyses and reports. Using literate programming approaches, participants will learn to build automated reusable reports in R. Practical exercises will include integration and manipulation of datasets, generation of summary statistics about a dataset, and how to produce high-quality tables and charts. Recommended participants Biologists and bioinformaticians wishing to structure and interpret data and generate dynamic reports using R. Prior expertise with R and the command line interface is required, to a level equivalent of that provided by the QFAB workshop “Introduction to R”. What will I learn? During this course you will learn about: Building dynamic reports for reproducible research with literate programming techniques Reformatting data and summarising and integrating datasets Generating high-quality graphic presentations of data Producing reusable scripts in R After this course you should be able to: Import tabular data files into R Use R to merge data from two or more files based on common fields Extract data from a table and summarise it in both text and graphical formats Create a knitR template that combines automated data analysis with free-form text interpretation 2016-05-11 09:00:00 UTC 2016-05-11 00:00:00 UTC University of Queensland University of Queensland, Brisbane, Australia University of Queensland Brisbane Australia Data architecture, analysis and design [] [] [] workshops_and_courses [] ABRRQFAB
  • Differential Gene Expression Analysis with R (microarray and NGS)

    25 May 2016

    Brisbane, Australia

    Differential Gene Expression Analysis with R (microarray and NGS) https://tess.elixir-europe.org/events/differential-gene-expression-analysis-with-r-microarray-and-ngs This hands-on workshop will introduce users of the R software environment to the specific skills and applications used in the analysis of microarray and next-generation sequencing (NGS) data. Practical exercises will include quality control and normalisation of data for differential gene expression, and linking genomic information to external public datasets. Recommended participants Biologists and bioinformaticians wishing to use R for RNA expression analysis. Prior expertise with R and the command line interface is required, to a level equivalent of that provided by the QFAB workshop “Introduction to R”. What will I learn? During this course you will learn about: Pre-processing and quality control of microarray and RNA-Seq data The use of R packages for the identification of differentially-expressed genes from expression data Systems biology interpretation of gene lists using pathway analysis Integration of expression and genome data with Ensembl databases After this course you should be able to: Import Affymetrix CEL files to R as data objects Carry out standard QC tests on microarray and RNA-Seq datasets Use the limma-voom R package to produce lists of differentially expressed genes between pairs of samples Identify over-represented gene ontology categories in gene lists using the GOStats package 2016-05-25 09:00:00 UTC 2016-05-25 00:00:00 UTC University of Queensland, Brisbane, Australia University of Queensland Brisbane Australia Sequencing Gene expression Data architecture, analysis and design [] [] [] workshops_and_courses [] ABRQFABR
  • Genomics Virtual Laboratory training workshop

    6 July 2016

    Brisbane, Australia

    Genomics Virtual Laboratory training workshop https://tess.elixir-europe.org/events/genomics-virtual-laboratory-training-workshop A special Genomics Virtual Laboratory training workshop will be held during the UQ Winter School in Mathematical and Computational Biology. The workshop is intended for bench scientists, and no previous informatics experience is needed. This workshop is free to those registrants who registered to attend the full five days of the Winter School and is limited to 36 places only. Please go to the Winter School Registration webpage for more information on how to register for this workshop. 2016-07-06 09:00:00 UTC 2016-07-06 00:00:00 UTC University of Queensland University of Queensland, Brisbane, Australia University of Queensland Brisbane Australia Genomics [] [] [] workshops_and_courses [] ABRQCIFGVL
  • Software Carpentry with R COMBINE Workshop

    11 - 12 July 2016

    Brisbane, Australia

    Software Carpentry with R COMBINE Workshop https://tess.elixir-europe.org/events/software-carpentry-with-r-combine-workshop This Software Carpentry with R workshop is a tie-in to the 2016 UQ Winter School in Mathematical and Computational Biology. The workshop is being brought to you by COMBINE. Attendees must have registered for at least some part of the UQ Winter School. 2016-07-11 09:00:00 UTC 2016-07-12 00:00:00 UTC University of Queensland Brisbane, Australia Brisbane Australia Data architecture, analysis and design Computer science Bioinformatics [] [] [] workshops_and_courses [] ABRCOMBINEBioinformatics
  • HANDS-ON WORKSHOP: BIOCONDUCTOR / SHINY FOR GENOMIC ANALYSIS

    3 November 2016

    Brisbane, Australia

    HANDS-ON WORKSHOP: BIOCONDUCTOR / SHINY FOR GENOMIC ANALYSIS https://tess.elixir-europe.org/events/hands-on-workshop-bioconductor-shiny-for-genomic-analysis The Bioconductor project (http://bioconductor.org) is a widely used collection of over 1,200 R packages for high-throughput genomic analysis. This workshop introduces established and new Bioconductor packages and workflows for analyzing high-throughput sequence data. The Shiny (http://shiny.rstudio.com) library and web server make it possible to create an interactive interface to R code and graphics. In the second part of this workshop, participants will write a simple genome browser using Shiny. By the end of the workshop, participants will be able to create their own interactive apps allowing sharing of analyses with collaborators. 2016-11-03 09:00:00 UTC 2016-11-03 00:00:00 UTC Queensland University of Technology Brisbane, Australia Brisbane Australia Data architecture, analysis and design Bioinformatics [] [] [] workshops_and_courses [] ABR
  • BEST PRACTICES IN BIOINFORMATICS TRAINING

    3 - 4 November 2016

    Brisbane, Australia

    BEST PRACTICES IN BIOINFORMATICS TRAINING https://tess.elixir-europe.org/events/best-practices-in-bioinformatics-training This workshop sponsored by GOBLET and ABACBS will provide an opportunity for the local bioinformatics training and education community to come together with GOBLET colleagues to share the training experiences and discuss topics of common interest. The workshop is aimed at those who have an interest in or are active in training and education, teaching topics relevant to bioinformatics. This includes those teaching in full time degree courses as well as those who teach short specialised courses. 2016-11-03 09:00:00 UTC 2016-11-04 00:00:00 UTC Queensland University of Technology Brisbane, Australia Brisbane Australia Bioinformatics [] [] [] workshops_and_courses [] ABRBioinformatics
  • Multivariate data analysis methods for biological data using the R package mixOmics

    4 November 2016

    Brisbane, Australia

    Multivariate data analysis methods for biological data using the R package mixOmics https://tess.elixir-europe.org/events/multivariate-data-analysis-methods-for-biological-data-using-the-r-package-mixomics The workshop will introduce the fundamental concepts of multivariate dimension reduction methodologies for data exploration, identification of biomarkers and integration of large data sets; especially in the context of systems biology, or in research areas where statistical data integration is required. The mixOmics workshop is aimed to data analysts in the fields of bioinformatics, computational biology and applied statistics with a good statistical knowledge and a good working knowledge in R. 2016-11-04 09:00:00 UTC 2016-11-04 00:00:00 UTC Queensland University of Technology Brisbane, Australia Brisbane Australia Data architecture, analysis and design Bioinformatics [] [] [] workshops_and_courses [] ABR
  • ABACBS/GOBLET RNA-Seq Data Analysis Workshop

    10 November 2016

    Brisbane, Australia

    ABACBS/GOBLET RNA-Seq Data Analysis Workshop https://tess.elixir-europe.org/events/abacbs-goblet-rna-seq-data-analysis-workshop This hands-on course introduces the participants to RNA-seq data analysis methods, tools and file formats. It covers the whole workflow from quality control and alignment to quantification and differential expression analysis, and also experimental design is discussed. This course is suitable to those who intend to employ RNA-seq in their research and who would like to understand the concepts underlying this method, even if they do not intend to analyse the data themselves. 2016-11-10 09:00:00 UTC 2016-11-10 00:00:00 UTC Queensland University of Technology Brisbane, Australia Brisbane Australia Data architecture, analysis and design Bioinformatics [] [] [] workshops_and_courses [] ABR
  • RNA-Seq analysis using Galaxy

    13 - 14 September 2017

    Brisbane, Australia

    RNA-Seq analysis using Galaxy https://tess.elixir-europe.org/events/rna-seq-analysis-using-galaxy-e3c1665a-493a-4be8-8fe3-36d3acc0333d 2017-09-13 09:00:00 UTC 2017-09-14 12:30:00 UTC QFAB Bioinformatics Room 3.141, Queensland Bioscience Precinct, The University of Queensland, Brisbane, Australia Room 3.141, Queensland Bioscience Precinct, The University of Queensland Brisbane Australia University of Queensland [] [] workshops_and_courses [] []
  • RNA-Seq analysis using Galaxy

    7 - 9 August 2018

    Brisbane, Australia

    RNA-Seq analysis using Galaxy https://tess.elixir-europe.org/events/rna-seq-analysis-using-galaxy-4bdade29-08f1-43f1-9565-80c67e622d6d 2018-08-07 09:00:00 UTC 2018-08-09 00:00:00 UTC QFAB Room 3.146, Queensland Bioscience Precinct, The University of Queensland, St Lucia, Brisbane, Australia Room 3.146, Queensland Bioscience Precinct, The University of Queensland, St Lucia Brisbane Australia 4067 [] training@qfab.org [] [] workshops_and_courses [] []
  • Genome assembly using Galaxy

    4 - 6 September 2018

    Brisbane, Australia

    Genome assembly using Galaxy https://tess.elixir-europe.org/events/genome-assembly-using-galaxy-4c8c0590-499b-4945-a1be-19e94725fe48 2018-09-04 09:00:00 UTC 2018-09-06 00:00:00 UTC QFAB Room 3.146, Queensland Bioscience Precinct, The University of Queensland, St Lucia , Brisbane, Australia Room 3.146, Queensland Bioscience Precinct, The University of Queensland, St Lucia Brisbane Australia 4067 [] training@qfab.org [] [] workshops_and_courses [] []
  • RNA-Seq analysis using Galaxy

    18 - 20 September 2018

    Brisbane, Australia

    RNA-Seq analysis using Galaxy https://tess.elixir-europe.org/events/rna-seq-analysis-using-galaxy-99676e29-b720-4387-b14e-a1ae64b772ad 2018-09-18 09:00:00 UTC 2018-09-20 00:00:00 UTC QFAB Room 3.141, Queensland Bioscience Precinct, The University of Queensland, St Lucia, Brisbane, Australia Room 3.141, Queensland Bioscience Precinct, The University of Queensland, St Lucia Brisbane Australia 4067 Bioinformatics University of Queensland training@qfab.org [] [] workshops_and_courses [] Galaxy RNA-Seqbioinformatics
  • UQ research data manager and FAIR

    5 June 2019

    Brisbane, Australia

    UQ research data manager and FAIR https://tess.elixir-europe.org/events/uq-research-data-manager-and-fair A short introduction to the UQRDM for CMM staff and a discussion about FAIR (Findable, Accessible, Interoperable, Reusable) data principles. 2019-06-05 10:00:00 UTC 2019-06-05 12:00:00 UTC CVL Brisbane, Australia Brisbane Australia 4067 [] [] [] workshops_and_courses [] []

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