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  • EMBL-EBI: Introduction to ontologies

    4 November 2015

    Cambridge, United Kingdom

    Elixir node event
    EMBL-EBI: Introduction to ontologies https://tess.elixir-europe.org/events/embl-ebi-introduction-to-ontologies This workshop will give an introduction to the basic concepts of ontologies and how they are useful in biological applications. After a brief overview of some existing resources, we will focus on the Gene Ontology, annotations made using the Gene Ontology and tools leveraging those for biomedical discovery. Also note: This event is part of a series of short introductions focusing on EMBL-EBI resources. If you want to learn more about these separate training events, see the Related Courses section below. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=bioinfo-onto_EMBL-EBI:%20Introduction%20to%20ontologies_4.11.2015_1555216&CourseName=EMBL-EBI:%20Introduction%20to%20ontologies&CourseDate=4.11.2015&CourseDuration=1&EventID=1555216).'' 2015-11-04 09:30:00 UTC 2015-11-04 17:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] This workshop is aimed at researchers who wish to understand why data standards are important and how they can be used in practiceGraduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Biological data analysis using InterMine

    26 November 2015

    Cambridge, United Kingdom

    Elixir node event
    Biological data analysis using InterMine https://tess.elixir-europe.org/events/biological-data-analysis-using-intermine-04ca2b51-ce2f-42ec-922a-e97c5496f55f [InterMine](http://intermine.org/) is a freely available data warehouse and analysis software system that has been used to create a suite of databases for the analysis of large and complex biological data sets. InterMine-based data analysis platforms are available for many organisms including [mouse](http://www.mousemine.org/mousemine/begin.do), [rat](http://ratmine.mcw.edu/ratmine/begin.do), [budding yeast](http://yeastmine.yeastgenome.org/yeastmine/begin.do), [plants](https://apps.araport.org/thalemine/begin.do), [nematodes](http://www.wormbase.org/tools/wormmine/begin.do), [fly](http://www.flymine.org/), [zebrafish](http://www.zebrafishmine.org/) and more recently [human](http://www.humanmine.org/). The InterMine web interface offers sophisticated query and visualisation tools, as well as comprehensive web services for bioinformaticians. Genomic and proteomic data within InterMine databases includes pathways, gene expression, interactions, sequence variants, GWAS, regulatory data and protein expression. We have recently re-designed the InterMine interface to provide a more intuitive user-experience. This workshop will provide an overview of key features of the new interface and how this can be used to interrogate genomic and proteomic data. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to Book or register Interest by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Biological%20data%20analysis%20using%20InterMine_bioinfo-intermine_26.11.2015_1539952&CourseName=Biological%20data%20analysis%20using%20InterMine&CourseDate=26.11.2015&CourseDuration=0.5&EventID=1539952).'' 2015-11-26 09:30:00 UTC 2015-11-26 12:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] or who need to search against several biological datasets to gain knowledge of a gene/gene set biological process or function. The course may also be of interest to bioinformaticians who wish to familiarise themselves with the InterMine suite of databases although the webservices will not be covered in detail. Postdocs and Staff members from the University of Cambridge Institutions and other external Institutions or individuals workshops_and_courses [] []
  • EMBL-EBI: Introduction to ontologies

    27 January 2017

    Cambridge, United Kingdom

    Elixir node event
    EMBL-EBI: Introduction to ontologies https://tess.elixir-europe.org/events/embl-ebi-introduction-to-ontologies-51eb70ed-e622-4bf1-b767-54b36cb7408b This workshop will give an introduction to the basic concepts of ontologies and how they are useful in biological applications. The workshop will have three sections: * A brief, practical introduction to ontologies and semantics * Focus on Gene Ontology (GO), annotations made using GO and tools leveraging those annotations for biomedical discovery. * A practical exercise in annotating data with ontologies using EBI tools. A standard annotation exercise will be provided, but attendees are encouraged to bring examples of their own data for annotation, preferably in spreadsheet form. Also note: This event is part of a series of short introductions focusing on EMBL-EBI resources. If you want to learn more about these separate training events, see the Related Courses section below. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=1980360&course-title=EMBL-EBI:%20Introduction%20to%20ontologies).'' 2017-01-27 14:00:00 UTC 2017-01-27 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Bioinformatics University of Cambridge Bioinformatics Training [] This workshop is aimed at researchers who wish to understand why data standards are important and how they can be used in practiceGraduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Foundation skills for HPC in computational biomolecular research - BioExcel Summer School

    3 - 7 July 2017

    Cambridge, United Kingdom

    Elixir node event
    Foundation skills for HPC in computational biomolecular research - BioExcel Summer School https://tess.elixir-europe.org/events/foundation-skills-for-hpc-in-computational-biomolecular-research-bioexcel-summer-school This 5-day BioExcel Summer School will use project-based learning to empower life scientists to get the most out of using computers. 2017-07-03 10:00:00 UTC 2017-07-07 14:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Charlotte Pearton [] Any students, postdocs or RAs with an interest in HPC 30 workshops_and_courses registration_of_interest HDRUK
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