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200 events found

Scientific topics: Bioinformatics 

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City: Bogota  or Athens  or Boston  or Cambridge 

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Target audience: Institutions and other ext...  or Graduate students  or The course is aimed primari... 

  • Analysis of mapped NGS data with SeqMonk

    3 February 2016

    Cambridge, United Kingdom

    Elixir node event
    Analysis of mapped NGS data with SeqMonk https://tess.elixir-europe.org/events/analysis-of-mapped-ngs-data-with-seqmonk-43412e62-e3fc-4434-a56e-41cec9577dbf [SeqMonk](http://www.bioinformatics.babraham.ac.uk/projects/seqmonk/) is a graphical program for the visualisation and analysis of large mapped sequencing datasets such as ChIP-Seq, RNA-Seq, and BS-Seq. The program allows you to view your reads against an annotated genome and to quantitate and filter your data to let you identify regions of interest. It is a friendly way to explore and analysis very large datasets. This course provides an introduction to the main features of SeqMonk and will run through the analysis of a couple of different datasets to show what sort of analysis options it provides. Further information is available [here](http://www.bioinformatics.babraham.ac.uk/training.html#seqmonk). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Analysing%20mapped%20NGS%20data%20with%20SeqMonk_bioinfo-seqmonk_03.02.2016_1572361&CourseName=Analysing%20mapped%20NGS%20data%20with%20SeqMonk&CourseDate=03.02.2016&CourseDuration=1&EventID=1572361).'' 2016-02-03 09:30:00 UTC 2016-02-03 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR RNA-Seq Exome sequencing Data mining Data visualisation ChIP-seq Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Molecular Phylogenetics

    20 - 22 April 2016

    Cambridge, United Kingdom

    Elixir node event
    Molecular Phylogenetics https://tess.elixir-europe.org/events/molecular-phylogenetics-e59d127b-28f9-496b-8225-52f6bd013d78 The course will provide training for bench-based biologists to use molecular data to construct and interpret phylogenies, and test their hypotheses. Delegates will gain hands-on practice of using a variety of programs freely available online and commonly used in molecular studies, interspersed with some lectures. Course timetable is available [here](https://drive.google.com/file/d/0B5BzNXp93Gp5WURyTFRUUGplbzg/view?usp=sharing). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Molecular%20Phylogenetics_bioinfo-phylng_20-22.04.2016_1572213&CourseName=Molecular%20Phylogenetics&CourseDate=20-22.04.2016&CourseDuration=3&EventID=1572213).'' 2016-04-20 08:30:00 UTC 2016-04-22 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Phylogenetics Data visualisation Data mining Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Variant Analysis with GATK

    13 - 14 June 2016

    Cambridge, United Kingdom

    Elixir node event
    Variant Analysis with GATK https://tess.elixir-europe.org/events/variant-analysis-with-gatk-3624e45d-cd74-4297-bc4c-d40298e39632 This workshop will focus on the core steps involved in calling variants with the [Broad’s Genome Analysis Toolkit](https://www.broadinstitute.org/gatk/), using the “Best Practices” developed by the GATK team. You will learn why each step is essential to the variant discovery process, what are the operations performed on the data at each step, and how to use the GATK tools to get the most accurate and reliable results out of your dataset. In the course of this workshop, we highlight key functionalities such as the GVCF workflow for joint variant discovery in cohorts, RNAseq­ specific processing, and somatic variant discovery using MuTect2. We also preview capabilities of the upcoming GATK version 4, including a new workflow for CNV discovery. The workshop is composed of one day of lectures (including many opportunities for Q&A) and one day of hands­on training. On the first day, we explain the rationale, theory and application of our Best Practices for Variant Discovery in high­-throughput sequencing data. On the second day, we walk attendees through hands­on exercises that teach how to manipulate the standard data formats involved in variant discovery and how to apply GATK tools appropriately to various use cases and data types. In the course of these exercises, we demonstrate useful tips and tricks for interacting with GATK, dealing with problems, and using third­party tools such as Samtools, IGV and RStudio. Please note that this workshop is focused on human data analysis. The majority of the materials presented does apply equally to non ­human data, and we will address some questions regarding adaptations that are needed for analysis of non­ human data, but we will not go into much detail on those points. The timetable can be found [here](http://bioinfotraining.bio.cam.ac.uk/postgraduate/specialized/gatk). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to Book or register Interest by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Variant%20Analysis%20with%20GATK%20_13-14.06.2016_1572767&CourseName=Variant%20Analysis%20with%20GATK&CourseDate=13-14.06.2016&CourseDuration=2&EventID=1572767).'' 2016-06-13 08:30:00 UTC 2016-06-14 16:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR RNA-Seq Genomics Exome sequencing Data visualisation Data mining ChIP-seq Bioinformatics University of Cambridge Bioinformatics Training [] The lecture­ based component of the workshop is aimed at a mixed audience of people who are new to the topic of variant discovery or to GATKseeking an introductory course into the toolsor who are already GATK users seeking to improve their understanding of and proficiency with the tools.The hands­on component is aimed at novice to intermediate users who are seeking detailed guidance with GATK and related tools.Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • An introduction to metabolomics and its application in life-sciences

    20 - 21 June 2016

    Cambridge, United Kingdom

    Elixir node event
    An introduction to metabolomics and its application in life-sciences https://tess.elixir-europe.org/events/an-introduction-to-metabolomics-and-its-application-in-life-sciences-e1cd9f51-270e-469e-98c9-47469364c8a3 The goal of metabolomics is to identify and quantify the complete biochemical composition of a biological sample. With the increase in genomic, transcriptomic and proteomic information there is a growing need to understand the metabolic phenotype that these genes and proteins ultimately control. The aim of this course is to provide an overview of metabolomics and its applications in life sciences, clinical and environmental settings. Over 2 days we will introduce different techniques used to extract metabolites and analyse samples to collect metabolomic data (such as HPLC or GC-based MS and NMR), present how to analyse such data, how to identify metabolites using online databases and how to map the metabolomic data to metabolic pathways. The course content will predominantly be based on analysing samples from model plant species such as Arabidopsis thaliana but the procedures are transferable to all other organisms, including clinical and environmental settings. A draft agenda can be found [here](https://bioinfotraining.bio.cam.ac.uk/postgraduate/specialized/bioinfo-metaintro). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=An%20introduction%20to%20metabolomics%20and%20its%20application%20in%20life-sciences_bioinfo-metaintro_20-21.06.2016_1572627&CourseName=An%20introduction%20to%20metabolomics%20and%20its%20application%20in%20life-sciences&CourseDate=20-21.06.2016&CourseDuration=2&EventID=1572627).'' 2016-06-20 08:30:00 UTC 2016-06-21 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Metabolomics Functional genomics Data visualisation Cell biology Bioinformatics University of Cambridge Bioinformatics Training [] This course is aimed at researchers with an interest in metabolomics and its applicationsGraduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • An Introduction to MATLAB for biologists

    23 - 24 June 2016

    Cambridge, United Kingdom

    Elixir node event
    An Introduction to MATLAB for biologists https://tess.elixir-europe.org/events/an-introduction-to-matlab-for-biologists-dfa68466-eb0e-4b57-9159-83dbf4735c0f This course aims to give you an introduction to the basics of Matlab. During the two day course we will use a practical based approach to give you the confidence to start using Matlab in your own work. In particular we will show you how to write your own scripts and functions and how to use pre-written functions. We will also explore the many ways in which help is available to Matlab users. In addition we will cover basic computer programming in Matlab to enable you to write more efficient scripts. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to Book or register Interest by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=An%20Introduction%20to%20MATLAB_bioinfo-MATLAB_23-24.06.2016_1619817&CourseName=An%20Introduction%20to%20MATLAB&CourseDate=23-24.06.2016&CourseDuration=2&EventID=1619817).'' 2016-06-23 08:30:00 UTC 2016-06-24 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Biology Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Ensembl API workshop

    27 - 30 June 2016

    Cambridge, United Kingdom

    Elixir node event
    Ensembl API workshop https://tess.elixir-europe.org/events/ensembl-api-workshop-ed40cf61-1540-489d-9760-531b921ce731 The [Ensembl project](http://www.ensembl.org/) provides a comprehensive and integrated source of annotation of mainly vertebrate genome sequences. This workshop is aimed at researchers and developers interested in exploring Ensembl beyond the website. The workshop covers the core, compara, variation and functional genomics (regulation) databases and APIs. The Ensembl Perl API Documentation can be found [here](http://www.ensembl.org/info/docs/api/index.html). For each of these, the database schema and the API design as well as the most important objects and their methods will be presented. This will be followed by practical sessions in which the participants can put theoretical learning into practice by writing their own Perl scripts. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Ensembl%20API%20Workshop_bioinfo-ensdev_27-30.06.2016_1572305&CourseName=Ensembl%20API%20Workshop&CourseDate=27-30.06.2016&CourseDuration=4&EventID=1572305).'' 2016-06-27 08:30:00 UTC 2016-06-30 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Bioinformatics University of Cambridge Bioinformatics Training [] Bioinformaticians and wet-lab biologists who can program in Perl.Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Interpreting the clinical genome with DECIPHER

    8 July 2016

    Cambridge, United Kingdom

    Elixir node event
    Interpreting the clinical genome with DECIPHER https://tess.elixir-europe.org/events/interpreting-the-clinical-genome-with-decipher [DECIPHER](https://decipher.sanger.ac.uk/) is a collaborative data sharing and interpretation platform that enables the secure upload, analysis and subsequent sharing of anonymised phenotype-linked patient variant data in rare genetic disorders. DECIPHER is a worldwide user community of over 250 clinical genetics centres and research groups from over 40 countries that utilise the built-in tools for aiding the interpretation of variants as well as to discover other patients that share similar phenotype and genomic findings. DECIPHER facilitates collaboration and exchange of information between a global community of clinical centers and researchers leading thereby accelerating discovery and diagnosis. Access to consented anonymised records is free to all users. User accounts are provided to bona-fide clinicians and lab scientists to enable deposition and sharing of anonymised patient data. The purpose of this half-day workshop is to acquaint participants with the DECIPHER website and database and introduce the various built-in tools for visualisation and interpretation of phenotype-linked genomic variation in anonymised consented patient data. It is hoped that by the end of this workshop, users will be able to carry out effective searches of data, use the built-in genome browser to visualise variation in context of other pathogenic and reference data sources, find other patients with similar variants and shared phenotypes, and identify most likely causes of phenotypic presentation by gene prioritisation. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to Book or register Interest by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Interpreting%20the%20clinical%20genome%20with%20DECIPHER_bioinfo-dec_08.07.2016_1734472&CourseName=Interpreting%20the%20clinical%20genome%20with%20DECIPHER&CourseDate=08.07.2016&CourseDuration=0.5&EventID=1734472).'' 2016-07-08 08:30:00 UTC 2016-07-08 11:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Rare diseases Genotype and phenotype Genomics Bioinformatics University of Cambridge Bioinformatics Training [] This course is suitable for all users who have an interest in Clinical Genetics with a special emphasis on rare disorders. It is also pertinent to those who seek to develop a better understanding of the role of accurate phenotyping in aiding the interpretation of filtered variants in patients and understanding genotype-phenotype correlations.Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Biological Imaging Data Management for Facility Managers

    13 July 2016

    Cambridge, United Kingdom

    Elixir node event
    Biological Imaging Data Management for Facility Managers https://tess.elixir-europe.org/events/biological-imaging-data-management-for-facility-managers [The Open Microscopy Environment](https://www.openmicroscopy.org/) (OME) is an open-source software project that develops tools that enable access, analysis, visualization, sharing and publication of biological image data. OME has three components: * OME-TIFF, standardised file format and data model; * Bio-Formats, a software library for reading proprietary image file formats; and * OMERO, a software platform for image data management and analysis. In this one day course, we will present the OMERO platform, and show how Facility Managers can use it to manage users, groups, and their microscopy, HCS and digital pathology data. Help pages on 'Using OMERO for Facility Managers' can be found [here](http://help.openmicroscopy.org/facility-manager.html). This course is organized alongside a one day course on Biological Imaging Data Management for Life Scientists. More information on this event are available [here](http://www.training.cam.ac.uk/bioinformatics/event/1769278). This course will be delivered by members of the OMERO team. The OME project is supported by BBSRC and Wellcome Trust. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Biological%20imaging%20data%20management%20for%20facility%20managers_bioinfo-omerofm_13.07.2016_1769270&CourseName=Biological%20imaging%20data%20management%20for%20facility%20managers&CourseDate=13.07.2016&CourseDuration=1&EventID=1769270).'' 2016-07-13 08:30:00 UTC 2016-07-13 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Data management Biological imaging Bioinformatics University of Cambridge Bioinformatics Training [] Facility Managers using orwanting to useOMERO for image data managementGraduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Biological Imaging Data Management for Life Scientists

    14 July 2016

    Cambridge, United Kingdom

    Elixir node event
    Biological Imaging Data Management for Life Scientists https://tess.elixir-europe.org/events/biological-imaging-data-management-for-life-scientists-eb567418-c2a4-45dc-8363-1778a4bc4b13 [The Open Microscopy Environment](https://www.openmicroscopy.org/) (OME) is an open-source software project that develops tools that enable access, analysis, visualization, sharing and publication of biological image data. OME has three components: * OME-TIFF, standardised file format and data model; * Bio-Formats, a software library for reading proprietary image file formats; and * OMERO, a software platform for image data management and analysis. In this one day course, we will present the OMERO platform, and show how to import, organise, view, search, annotate and publish imaging data. Additionally, we will briefly introduce how to use a variety of analysis tools with OMERO. This course is organized alongside a one day course on Biological Imaging Data Management for Facility Managers. More information on this event are available [here](http://www.training.cam.ac.uk/bioinformatics/event/1769270). This course will be delivered by members of the OMERO team. The OME project is supported by BBSRC and Wellcome Trust. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Biological%20imaging%20data%20management%20for%20life%20scientists_bioinfo-omerols_14.07.2016_1769278&CourseName=Biological%20imaging%20data%20management%20for%20life%20scientists&CourseDate=14.07.2016&CourseDuration=1&EventID=1769278).'' 2016-07-14 08:30:00 UTC 2016-07-14 16:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Data management Biological imaging Bioinformatics University of Cambridge Bioinformatics Training [] Anyone wanting to use OMERO to organizeviewannotate and publish imaging dataFacility Managers wanting to train usersGraduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Image Processing and Visualisation with LithoGraphX

    4 - 5 August 2016

    Cambridge, United Kingdom

    Elixir node event
    Image Processing and Visualisation with LithoGraphX https://tess.elixir-europe.org/events/image-processing-and-visualisation-with-lithographx [LithoGraphX](http://www.lithographx.org/) is a software to visualize, process and analyse 3D images and meshes. On the first day of this course, we will demonstrate how to use LithoGraphX to visualize, clean and process 2D and 3D images. We will cover: (i) how to extract cell shape from 2D or 3D images by marking the cell wall or membrane, (ii) how to extract key morphological features and (iii) how to use these features to build a cell classifier. The first day is intended for biologists and computer scientists interested in using LithoGraphX. On the second day, we will see how to write and distribute extensions to LithoGraphX. To this purpose, we will learn more about the internals of LithoGraphX and its API both in C++ and Python. The second day is intended for computer scientists wanting either to write their own algorithm or automate complex protocols. Participants can choose to register for both days or for individual days, depending on their interest and background knowledge. The timetable for this event can be found [here](http://bioinfotraining.bio.cam.ac.uk/postgraduate/specialized/bioinfo-litho). This course is organized in collaboration with Dr Susana Sauret-Gueto from the OpenPlant Lab of the Department of Plant Sciences of the University of Cambridge. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to Book or register Interest by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Image%20Processing%20and%20Visualisation%20with%20LithoGraphX_bioinfo-Litho_4-5.08.2016_1860699&CourseName=Image%20Processing%20and%20Visualisation%20with%20LithoGraphX&CourseDate=4-5.08.2016&CourseDuration=2&EventID=1860699).'' 2016-08-04 09:00:00 UTC 2016-08-05 16:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Data visualisation Biological imaging Bioinformatics University of Cambridge Bioinformatics Training [] Day1 is intended for biologists and computer scientists interested in using LithoGraphX. Some experience in imaging is desirable but not required.Day2 is intended for computer scientists wanting either to write their own algorithm or automate complex protocols. Basic python knowledge and familiar with C++ are required.Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • EMBL-EBI: Exploring Protein Sequence and Functional Information with UniProt

    24 October 2016

    Cambridge, United Kingdom

    Elixir node event
    EMBL-EBI: Exploring Protein Sequence and Functional Information with UniProt https://tess.elixir-europe.org/events/embl-ebi-exploring-protein-sequence-and-functional-information-with-uniprot-bc38f8b8-e3f0-487f-a602-ab47a835e393 This workshop will give an introduction to the resources provided by [UniProt](http://www.uniprot.org/). Participants will be shown, and given hands-on experience in, how to navigate the website, search for data and run analysis tools. The session also covers what the sources of our data are and how they are curated. A basic introduction into accessing UniProt Knowledgebase programmatically will be given as well. Also note: This event is part of a series of short introductions focusing on EMBL-EBI resources. If you want to learn more about these separate training events, see the Related Courses section below. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=1572412&course-title=Exploring%20Protein%20Sequence%20and%20Functional%20Information%20with%20UniProt).'' 2016-10-24 12:00:00 UTC 2016-10-24 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Proteins Bioinformatics University of Cambridge Bioinformatics Training [] This workshop is aimed at researchers who want to learn more about the UniProt resourcesGraduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Analysis of gene regulatory sequencing data: ChIP-seq, ATAC-seq and Hi-C

    24 - 25 November 2016

    Cambridge, United Kingdom

    Elixir node event
    Analysis of gene regulatory sequencing data: ChIP-seq, ATAC-seq and Hi-C https://tess.elixir-europe.org/events/analysis-of-gene-regulatory-sequencing-data-chip-seq-atac-seq-and-hi-c This advanced course will cover high-throughput sequencing data processing, ChIP-seq data analysis (including alignment, peak calling), differences in analyses methods for transcription factors (TF) binding and epigenomic datasets, a range of downstream analysis methods for extracting meaningful biology from ChIP-seq data and will provide an introduction to the analysis of open chromatin with ATAC-seq and long-distance interactions with chromosomal conformation capture based Hi-C datasets. Materials for this course can be found [here](https://github.com/shamith-s/NGS_course). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=1878956&course-title=Analysis%20of%20gene%20regulatory%20sequencing%20data).'' 2016-11-24 09:30:00 UTC 2016-11-25 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Epigenomics Data visualisation ChIP-seq Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Protein Structure Analysis

    28 - 29 November 2016

    Cambridge, United Kingdom

    Elixir node event
    Protein Structure Analysis https://tess.elixir-europe.org/events/protein-structure-analysis This course covers data resources and analytical approaches for the discovery and interpretation of biomacromolecular structures. Day 1 focuses on public repositories of structural data ([Protein Data Bank](http://www.ebi.ac.uk/pdbe/) and [Electron Microscopy Data Bank](https://www.ebi.ac.uk/pdbe/emdb/)) and resources for protein analysis and classification ([Pfam](http://pfam.xfam.org/), [InterPro](https://www.ebi.ac.uk/interpro/) and [HMMER](https://www.ebi.ac.uk/Tools/hmmer)). Day 2 covers how to find information about the structure and function of your protein sequence using [CATH](http://www.cathdb.info/), principles of modern state-of-the-art protein modelling with [ Phyre2](http://www.sbg.bio.ic.ac.uk/phyre2/) and methods for predicting the effects of mutations on protein structure and function using the [SAAP family of tools](http://www.bioinf.org.uk/saap/). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=1879212&course-title=Protein%20Structure%20Analysis).'' 2016-11-28 09:30:00 UTC 2016-11-29 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Protein structure analysis Data visualisation Data mining Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • An Introduction to Solving Biological Problems with R

    30 November - 1 December 2016

    Cambridge, United Kingdom

    Elixir node event
    An Introduction to Solving Biological Problems with R https://tess.elixir-europe.org/events/an-introduction-to-solving-biological-problems-with-r-37214767-9608-4ad2-850f-bead6419ddd7 [R](https://www.r-project.org/) is a highly-regarded, free, software environment for statistical analysis, with many useful features that promote and facilitate reproducible research. In this course, we give an introduction to the R environment and explain how it can be used to import, manipulate and analyse tabular data. After the course you should feel confident to start exploring your own dataset using the materials and references provided. Course materials are available [here](http://cambiotraining.github.io/r-intro/). Please note that although we will demonstrate how to perform statistical analysis in R, we will not cover the theory of statistical analysis in this course. Those seeking an in-depth explanation of how to perform and interpret statistical tests are advised to see the list of Related courses. Moreover, those with some programming experience in other languages (e.g. Python, Perl) might wish to attend the follow-on [Data Analysis and Visualisation in R](http://training.csx.cam.ac.uk/bioinformatics/course/bioinfo-intR) course. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=1819432&course-title=An%20Introduction%20to%20Solving%20Biological%20Problems%20with%20R).'' 2016-11-30 09:30:00 UTC 2016-12-01 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Biology Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Analysis of DNA Methylation using Sequencing

    2 December 2016

    Cambridge, United Kingdom

    Elixir node event
    Analysis of DNA Methylation using Sequencing https://tess.elixir-europe.org/events/analysis-of-dna-methylation-using-sequencing This course will cover all aspects of the analysis of DNA methylation using sequencing, including primary analysis, mapping and quality control of BS-Seq data, common pitfalls and complications. It will also include exploratory analysis of methylation, looking at different methods of quantitation, and a variety of ways of looking more widely at the distribution of methylation over the genome. Finally, the course will look at statistical methods to predict differential methylation. The course will be comprised of a mixture of theoretical lectures and practicals covering a range of different software packages. Course materials are available [here](http://www.bioinformatics.babraham.ac.uk/training.html#bsseq). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=1827776&course-title=The%20Analysis%20of%20DNA%20Methylation%20using%20Sequencing).'' 2016-12-02 09:30:00 UTC 2016-12-02 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Epigenetics Data visualisation Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • An Introduction to Solving Biological Problems with Python

    5 - 6 December 2016

    Cambridge, United Kingdom

    Elixir node event
    An Introduction to Solving Biological Problems with Python https://tess.elixir-europe.org/events/an-introduction-to-solving-biological-problems-with-python-ab385204-c78b-4afc-a50e-aca917f410d1 This course provides a practical introduction to the writing of Python programs for the complete novice. Participants are lead through the core aspects of Python illustrated by a series of example programs. Upon completion of the course, attentive participants will be able to write simple Python programs from scratch and to customize more complex code to fit their needs. Course materials are available [here](http://pycam.github.io). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=1882781&course-title=An%20Introduction%20to%20Solving%20Biological%20Problems%20with%20Python).'' 2016-12-05 09:30:00 UTC 2016-12-06 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Biology Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Basic statistics and data handling

    7 - 9 December 2016

    Cambridge, United Kingdom

    Elixir node event
    Basic statistics and data handling https://tess.elixir-europe.org/events/basic-statistics-and-data-handling This three day course is intended to open doors to applying statistics - whether directly increasing skills and personally undertaking analyses, or by expanding knowledge towards identifying collaborators. The end goal is to drive confident engagement with data analysis and further training - increasing the quality and reliability of interpretation, and putting that interpretation and subsequent presentation into the hands of the researcher. Each day of the course will deliver a mixture of lecture, workshop and hands-on practice – and will focus on the following specific elements. Day 1 focuses on basic approaches and the computer skills required to do downstream analysis. Covering: Basic skills for data manipulation in R. How to prepare your data effectively. Principles of experimental design and how this influences analysis. On day 2, participants will explore the core concepts of statistics – so that they can begin to see how they can be applied to their own work, and to also help with better critical evaluation of the work of others. Covering: Basic statistics concepts and practice: power, variability, false discovery, t-test, effect size, simulations to understand what a p-value means. On day 3 will use some practical statistics examples in R to introduce concepts in data presentation for publication. Covering: Some practical examples of statistics in R. Visualising and publishing your data. Course materials are available [here](https://bioinformatics-core-shared-training.github.io/winter-school2016/). This event is sponsored by [CRUK](http://www.cancerresearchuk.org/). 2016-12-07 09:30:00 UTC 2016-12-09 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Data visualisation Bioinformatics University of Cambridge Bioinformatics Training [] The course is aimed primarily at mid-career scientists – especially those whose formal education likely included statisticsbut who have not perhaps put this into practice since.Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Image Analysis for Biologists

    12 - 14 December 2016

    Cambridge, United Kingdom

    Elixir node event
    Image Analysis for Biologists https://tess.elixir-europe.org/events/image-analysis-for-biologists-a6ce3427-1d29-46e0-9738-bc9d4dca1538 This course will focus on computational methods for analysing cellular images and extracting quantitative data from them. The aim of this course is to familiarise the participants with computational image analysis methodologies, and to provide hands-on training in running quantitative analysis pipelines. On day 1 we will introduce principles of image processing and analysis, giving an overview of commonly used algorithms through a series of talks and practicals based on [Fiji](http://fiji.sc/), an extensible open source software package. On day 2, we will describe the open [Icy platform](http://icy.bioimageanalysis.org/) developed at the Institut Pasteur. Icy is a next-generation, user-friendly software offering powerful acquisition, visualization, annotation and analysis algorithms for 5D bioimaging data, together with unique automation/scripting capabilities (notably via its graphical programming interface) and tight integration with existing software (e.g. ImageJ, Matlab, Micro-Manager). On day 3, we will cover time series processing and cell tracking using [TrackMate](http://imagej.net/TrackMate). Additionally, in the afternoon we will run a study design and data clinic (sign up will be required) for participants that wish to discuss their experiments. A timetable is available [here](http://bioinfotraining.bio.cam.ac.uk/postgraduate/specialized/bioinfo-image). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=1879343&course-title=Image%20Analysis%20for%20Biologists).'' 2016-12-12 09:30:00 UTC 2016-12-14 16:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Data visualisation Data mining Biological imaging Bioinformatics University of Cambridge Bioinformatics Training [] Researchers who are applying or planning to apply image analysis in their researchGraduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Using CellProfiler and CellProfiler Analyst to analyse biological images

    15 - 16 December 2016

    Cambridge, United Kingdom

    Elixir node event
    Using CellProfiler and CellProfiler Analyst to analyse biological images https://tess.elixir-europe.org/events/using-cellprofiler-and-cellprofiler-analyst-to-analyse-biological-images Microscopy experiments have proven to be a powerful means of generating information-rich data for biological applications. From small-scale microscopy experiments to time-lapse movies and high-throughput screens, automatic image analysis is more objective and quantitative and less tedious than visual inspection. This course will introduce users to the free open-source image analysis program [CellProfiler](http://cellprofiler.org/) and its companion data exploration program CellProfiler Analyst. We will show how CellProfiler can be used to analyse a variety of types of imaging experiments. We will also briefly discuss the basic principles of supervised machine learning with CellProfiler Analyst in order to score complex and subtle phenotypes. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=1879361&course-title=Using%20CellProfiler%20and%20CellProfiler%20Analyst%20to%20analyse%20biological%20images).'' 2016-12-15 09:30:00 UTC 2016-12-16 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Data visualisation Data mining Biological imaging Bioinformatics University of Cambridge Bioinformatics Training [] Researchers who want to extract quantitative information from microscopy imagesGraduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Data Carpentry

    18 - 19 January 2017

    Cambridge, United Kingdom

    Elixir node event
    Data Carpentry https://tess.elixir-europe.org/events/elixiruk-data-carpentry-3863c05b-640a-4915-a384-3fe2df9a723f In many domains of research the rapid generation of large amounts of data is fundamentally changing how research is done. The deluge of data presents great opportunities, but also many challenges in managing, analyzing and sharing data. Data Carpentry workshops are designed to teach basic concepts, skills and tools for working more effectively with data. The workshop is aimed at researchers in the life sciences at all career stages and is designed for learners with little to no prior knowledge of programming, shell scripting, or command line tools. Course materials are available [here](https://lgatto.github.io/2017-01-18-CAM/). This course is organized in collaboration with [ElixirUK](http://www.elixir-uk.org/) and the [Software Sustainability Institute](https://www.software.ac.uk/). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=1923870&course-title=Data%20Carpentry).'' 2017-01-18 09:30:00 UTC 2017-01-19 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • EMBL-EBI: Introduction to EMBL-EBI resources

    23 January 2017

    Cambridge, United Kingdom

    Elixir node event
    EMBL-EBI: Introduction to EMBL-EBI resources https://tess.elixir-europe.org/events/embl-ebi-introduction-to-embl-ebi-resources-9cdc1690-b1ab-4451-9bb0-a770c95c2097 This workshop is an introduction to [EMBL-EBI](http://www.ebi.ac.uk/) and the life science data resources it provides. Participants will be shown how to navigate the website and search for appropriate database resources and tools, whilst also highlighting resources such as [Train online](http://www.ebi.ac.uk/training/online/) (our e-learning portal) and the literature resources at [Europe PMC](https://europepmc.org/). This workshop will not focus on a set of specific resources; for more focused workshops please see the others within this series (see the Related Courses section below) Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=1980056&course-title=EMBL-EBI:%20Introduction%20to%20EMBL-EBI%20resources).'' 2017-01-23 09:30:00 UTC 2017-01-23 13:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Bioinformatics University of Cambridge Bioinformatics Training [] This workshop is aimed at researchers who are looking for an overview of the bioinformatics resources provided by EMBL-EBIGraduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Data Analysis and Visualisation in R

    26 January 2017

    Cambridge, United Kingdom

    Elixir node event
    Data Analysis and Visualisation in R https://tess.elixir-europe.org/events/data-analysis-and-visualisation-in-r-1adbe2a5-a87e-4e55-9322-3cb297a94d9a This course introduces some relatively new additions to the R programming language: dplyr and ggplot2. In combination these R packages provide a powerful toolkit to make the process of manipulating and visualising data easy and intuitive. Materials for this course can be found [here](http://bioinformatics-core-shared-training.github.io/r-intermediate/). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=1923726&course-title=Data%20analysis%20and%20visualisation).'' 2017-01-26 09:30:00 UTC 2017-01-26 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Data visualisation Biology Bioinformatics University of Cambridge Bioinformatics Training [] Existing R users who are not familiar with dplyr and ggplot2Those with programming experience in other languages that want to know what R can offer themGraduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • EMBL-EBI: Introduction to ontologies

    27 January 2017

    Cambridge, United Kingdom

    Elixir node event
    EMBL-EBI: Introduction to ontologies https://tess.elixir-europe.org/events/embl-ebi-introduction-to-ontologies-51eb70ed-e622-4bf1-b767-54b36cb7408b This workshop will give an introduction to the basic concepts of ontologies and how they are useful in biological applications. The workshop will have three sections: * A brief, practical introduction to ontologies and semantics * Focus on Gene Ontology (GO), annotations made using GO and tools leveraging those annotations for biomedical discovery. * A practical exercise in annotating data with ontologies using EBI tools. A standard annotation exercise will be provided, but attendees are encouraged to bring examples of their own data for annotation, preferably in spreadsheet form. Also note: This event is part of a series of short introductions focusing on EMBL-EBI resources. If you want to learn more about these separate training events, see the Related Courses section below. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=1980360&course-title=EMBL-EBI:%20Introduction%20to%20ontologies).'' 2017-01-27 14:00:00 UTC 2017-01-27 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Bioinformatics University of Cambridge Bioinformatics Training [] This workshop is aimed at researchers who wish to understand why data standards are important and how they can be used in practiceGraduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • EMBL-EBI: Introduction to Interpro

    1 February 2017

    Cambridge, United Kingdom

    Elixir node event
    EMBL-EBI: Introduction to Interpro https://tess.elixir-europe.org/events/embl-ebi-introduction-to-interpro-26a236c7-68ed-453d-8b24-39a35c23fdd0 This workshop will give an introduction to the protein sequence analysis & classification database [Interpro](https://www.ebi.ac.uk/interpro/). Interpro is a bioinformatics resource that provides functional analysis of protein sequences by classifying them into families and predicting the presence of domains and important sites. To classify proteins in this way, InterPro uses predictive models, known as signatures, provided by several different databases (referred to as member databases) that make up the InterPro Consortium. Also note: This event is part of a series of short introductions focusing on EMBL-EBI resources. If you want to learn more about these separate training events, see the Related Courses section below. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=1994238&course-title=EMBL-EBI:%20Introduction%20to%20Interpro).'' 2017-02-01 09:30:00 UTC 2017-02-01 13:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • EMBL-EBI: An Introduction to Sequence Searching

    2 February 2017

    Cambridge, United Kingdom

    Elixir node event
    EMBL-EBI: An Introduction to Sequence Searching https://tess.elixir-europe.org/events/embl-ebi-an-introduction-to-sequence-searching-3ce4432f-2c97-4386-9725-8031255c1ea2 This workshop introduces the area of sequence similarity searching and focuses on how to use tools like BLAST and PSI-Search to find homologous sequences in EMBL-EBI databases. This session will include tips on which tool and database to use, input formats, how to change parameters and how to interpret the results pages. Further information can be found [here](https://www.ebi.ac.uk/training/events/2015/introduction-sequence-searching). Also note: This event is part of a series of short introductions focusing on EMBL-EBI resources. If you want to learn more about these separate training events, see the Related Courses section below. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=1980118&course-title=EMBL-EBI%20:%20An%20Introduction%20to%20Sequence%20Searching).'' 2017-02-02 14:00:00 UTC 2017-02-02 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Bioinformatics University of Cambridge Bioinformatics Training [] This workshop is aimed at researchers who need to undertake sequence searching as part of their workGraduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • EMBL-EBI: Interactions & Pathways - IntAct & Complex Portal

    3 February 2017

    Cambridge, United Kingdom

    Elixir node event
    EMBL-EBI: Interactions & Pathways - IntAct & Complex Portal https://tess.elixir-europe.org/events/embl-ebi-interactions-pathways-intact-complex-portal-20382ef8-3c8a-41cc-8ec5-f433be4a207e This workshop will give an introduction to the protein interaction database [IntAct](http://www.ebi.ac.uk/intact) and the [Complex Portal](http://www.ebi.ac.uk/intact/complex/) service. You will also briefly learn how to visualise protein interactions using the Cytoscape application. Also note: This event is part of a series of short introductions focusing on EMBL-EBI resources. If you want to learn more about these separate training events, see the Related Courses section below. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=1994064&course-title=EMBL-EBI:%20Interactions%20and%20Pathways%20-%20IntAct%20and%20Complex%20Portal).'' 2017-02-03 14:00:00 UTC 2017-02-03 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Bioinformatics University of Cambridge Bioinformatics Training [] This workshop is aimed at researchers who are either generating or integrating molecular interaction data in their research. This could be protein-protein interaction as well as protein-RNAprotein-DNA and protein-small molecular interactions.Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • EMBL-EBI: Introduction to Chemogenomics Resources

    6 February 2017

    Cambridge, United Kingdom

    Elixir node event
    EMBL-EBI: Introduction to Chemogenomics Resources https://tess.elixir-europe.org/events/embl-ebi-chemical-biology-resources-3bc976eb-297a-48d0-8d6e-34ea22ad4ca5 An introduction to the chemogenomics resources available from the EBI. The workshop will cover resources such as [ChEMBL](https://www.ebi.ac.uk/chembl), [SureChEMBL](https://www.surechembl.org/search/), [UniChem](https://www.ebi.ac.uk/unichem/) and [Open Targets](https://www.opentargets.org/). This session is one of a series of short introductions to EBI Services, run together, but bookable separately (see Related Courses section below). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=1980245&course-title=EMBL-EBI:%20Chemical%20Biology%20Resources).'' 2017-02-06 09:30:00 UTC 2017-02-06 12:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Chemical biology Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Introduction to Scientific Figure Design

    7 February 2017

    Cambridge, United Kingdom

    Elixir node event
    Introduction to Scientific Figure Design https://tess.elixir-europe.org/events/introduction-to-scientific-figure-design-b8ab0816-72c2-4a30-9fd3-caf7cc583b37 This course provides a practical guide to producing figures for use in reports and publications. It is a wide ranging course which looks at how to design figures to clearly and fairly represent your data, the practical aspects of graph creation, the allowable manipulation of bitmap images and compositing and editing of final figures. The course will use a number of different open source software packages and is illustrated with a number of example figures adapted from common analysis tools. Further information and access to the course materials is [here](http://www.bioinformatics.babraham.ac.uk/training.html#figuredesign). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=1923819&course-title=Introduction%20to%20Scientific%20Figure%20Design).'' 2017-02-07 09:30:00 UTC 2017-02-07 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Data visualisation Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • EMBL-EBI: Transcriptomics Data and Tools

    14 February 2017

    Cambridge, United Kingdom

    Elixir node event
    EMBL-EBI: Transcriptomics Data and Tools https://tess.elixir-europe.org/events/embl-ebi-transcriptomics-data-and-tools-34d01da3-3912-495d-9ad6-a93fae207c1f This workshop will give an introduction to the functional genomics resources provided by EMBL-EBI and hands-on practical experience of searching and accessing appropriate data and information. The session will also cover data submission to [ArrayExpress](https://www.ebi.ac.uk/arrayexpress/) using Annotare. Also note: This event is part of a series of short introductions focusing on EMBL-EBI resources. If you want to learn more about these separate training events, see the Related Courses section below. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=1980346&&course-title=EMBL-EBI:%20Transcriptomics%20Data%20and%20Tools).'' 2017-02-14 09:30:00 UTC 2017-02-14 13:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Gene expression Transcriptomics Bioinformatics University of Cambridge Bioinformatics Training [] This workshop is aimed at researchers who wish to use and submit functional genomics data. This workshop will not however cover the analysis of such data.Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • EMBL-EBI: Exploring genetic variation data

    16 February 2017

    Cambridge, United Kingdom

    Elixir node event
    EMBL-EBI: Exploring genetic variation data https://tess.elixir-europe.org/events/embl-ebi-exploring-genetic-variation-data This workshop will give an introduction to exploring variation data by the use of the [European Variation Archive (EVA)](https://www.ebi.ac.uk/eva/), [Ensembl Variant Effect Predictor (VEP)](http://www.ensembl.org/info/docs/tools/vep/index.html) and [UniProt](http://www.uniprot.org/). The workshop will include a mixture of tutorials and hands-on sessions covering a number of key resources to both find and analyse variation data. Also note: This event is part of a series of short introductions focusing on EMBL-EBI resources. If you want to learn more about these separate training events, see the Related Courses section below. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=1994796&course-title=EMBL-EBI:%20Exploring%20genetic%20variation%20data).'' 2017-02-16 09:15:00 UTC 2017-02-16 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Whole genome sequencing Bioinformatics University of Cambridge Bioinformatics Training [] This workshop is aimed at those who want to explore genetic variation data.Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
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