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  • EMBL-EBI: Interactions & Pathways - Reactome

    3 November 2015

    Cambridge, United Kingdom

    Elixir node event
    EMBL-EBI: Interactions & Pathways - Reactome https://tess.elixir-europe.org/events/embl-ebi-interactions-pathways-reactome This workshop will give an introduction to the [Reactome](http://www.reactome.org) pathway database website and analysis tools, using short presentations and practical hands-on exercises. The session will also explain where to learn more, get help, and how to become involved in adding more pathway information to Reactome. Also note: This event is part of a series of short introductions focusing on EMBL-EBI resources. If you want to learn more about these separate training events, see the Related Courses section below. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=EMBL-EBI:%20Interactions%20and%20Pathways%20-%20Reactome_bioinfo-ebireactome_3.11.2015_1392944&CourseName=EMBL-EBI:%20Interactions%20and%20Pathways%20-%20Reactome&CourseDate=3.11.2015&CourseDuration=0.5&EventID=1392944).'' 2015-11-03 09:30:00 UTC 2015-11-03 13:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] This workshop is aimed at researchers who want to learn about pathways or identify pathways relevant to a set of moleculesGraduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Using the Ensembl Genome Browser

    27 November 2015

    Cambridge, United Kingdom

    Elixir node event
    Using the Ensembl Genome Browser https://tess.elixir-europe.org/events/using-the-ensembl-genome-browser-b763c62e-9dff-40c2-b9bf-82369f4a1911 The [Ensembl Project](http://www.ensembl.org) provides a comprehensive and integrated source of annotation of, mainly vertebrate, genome sequences. This 1-day workshop offers participants the possibility of gaining hands-on experience in the use of the Ensembl genome browser but also provides them with the necessary background information. This course will focus on the vertebrate genomes in Ensembl, however much of what will be covered is also applicable to the non-vertebrates (plants, bacteria, fungi, metazoa and protists) in Ensembl Genomes. There may be some tools and topics that do not apply to non-vertebrates; if you have any questions about this, please email the Ensembl Outreach Project Leader, [mailto:emily@ebi.ac.uk Emily Perry]. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to Book or register Interest by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Using%20the%20Ensembl%20Genome%20Browser_bioinfo-ensbrow_2015.11.27_1528909&CourseName=Using%20the%20Ensembl%20Genome%20Browser&CourseDate=2015.11.27&CourseDuration=1&EventID=1528909).'' 2015-11-27 09:30:00 UTC 2015-11-27 17:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] The workshop is primarily targeted at wetlab researchersand we customise the course for species of interest and to include total beginners to our browser up through frequent usersGraduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • EMBL-EBI: Interactions & Pathways - Reactome

    28 February 2017

    Cambridge, United Kingdom

    Elixir node event
    EMBL-EBI: Interactions & Pathways - Reactome https://tess.elixir-europe.org/events/embl-ebi-interactions-pathways-reactome-f28ac773-8e34-44b5-ad1d-7a4b8e311f04 This workshop will give an introduction to the [Reactome](http://www.reactome.org) pathway database website and analysis tools, using short presentations and practical hands-on exercises. The session will also explain where to learn more, get help, and how to become involved in adding more pathway information to Reactome. Further information can be found [here](https://www.ebi.ac.uk/training/events/2015/interactions-pathways-reactome-1). Also note: This event is part of a series of short introductions focusing on EMBL-EBI resources. If you want to learn more about these separate training events, see the Related Courses section below. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=1994156&course-title=EMBL-EBI:%20Interactions%20and%20Pathways%20-%20Reactome).'' 2017-02-28 09:00:00 UTC 2017-02-28 11:45:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Bioinformatics University of Cambridge Bioinformatics Training [] This workshop is aimed at researchers who want to learn about pathways or identify pathways relevant to a set of moleculesGraduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Biological data analysis using InterMine

    27 October 2017

    Cambridge, United Kingdom

    Elixir node event
    Biological data analysis using InterMine https://tess.elixir-europe.org/events/biological-data-analysis-using-intermine-a237eb77-8aca-4dd0-bf8c-0a47c9295e4d [InterMine](http://intermine.org/) is a freely available data integration and analysis system that has been used to create a suite of databases for the analysis of large and complex biological data sets. InterMine-based data analysis platforms are available for many organisms including mouse, rat, budding yeast, plants, nematodes, fly, zebrafish and more recently human. The InterMine web interface offers sophisticated query and visualisation tools, as well as comprehensive web services for bioinformaticians. Genomic and proteomic data within InterMine databases includes pathways, gene expression, interactions, sequence variants, GWAS, regulatory data and protein expression. Part 1 (2.5 - 3 hours) will introduce participants to all aspects of the user interface, starting with some simple exercises and building up to more complex analysis encompassing several analysis tools and comparative analysis across organisms. No previous experience is necessary for this part of the workshop. Part 2 (1 hour) will focus on the InterMine API and introduce running InterMine searches through Python and Perl scripts. While complete beginners are welcome, some basic knowledge of perl, and/or python would be an advantage. The InterMine R package will also be introduced. Those not interested in this part of the workshop are welcome to leave or there will be a more advanced exercise using the web interface available as an alternative. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to Book or register Interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=1572573&amp;course-title=Biological%20data%20analysis%20using%20InterMine).'' 2017-10-27 08:30:00 UTC 2017-10-27 12:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] The course is aimed at <b>bench biologists and bioinformaticians</b> who need to analyse their own data against large biological datasetsor who need to search against several biological datasets to gain knowledge of a gene/gene setbiological process or function. The exercises will mainly use the flyhuman and mouse databasesbut the course is applicable to anyone working with data for which an InterMine database is available. See www.intermine.org for a comprehensive list of InterMine databases.Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Biological data analysis using InterMine (User Interface)

    19 June 2019

    Cambridge, United Kingdom

    Elixir node event
    Biological data analysis using InterMine (User Interface) https://tess.elixir-europe.org/events/biological-data-analysis-using-intermine-98ca2f5d-2b72-48e4-bd7b-463d61ab6d2b [InterMine](http://intermine.org/) is a freely available data integration and analysis system that has been used to create a suite of databases for the analysis of large and complex biological data sets. InterMine-based data analysis platforms are available for many organisms including mouse, rat, budding yeast, plants, nematodes, fly, zebrafish and more recently human. See [here](http://intermine.org/) for a comprehensive list of InterMine databases. The InterMine web interface offers sophisticated query and visualisation tools, as well as comprehensive web services for bioinformaticians. Genomic and proteomic data within InterMine databases includes pathways, gene expression, interactions, sequence variants, GWAS, regulatory data and protein expression. This course will focus on the InterMine web interface and will introduce participants to all aspects of the user interface, starting with some simple exercises and building up to more complex analysis encompassing several analysis tools and comparative analysis across organisms. The exercises will mainly use the fly, human and mouse databases, but the course is applicable to anyone working with data for which an InterMine database is available. This event is organised alongside a half day course on Biological data analysis using the InterMine API. More information on this event are available [here](https://training.csx.cam.ac.uk/bioinformatics/course/bioinfo-intermineAPI). The training room is located on the first floor and there is currently no wheelchair or level access available to this level. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to Book or register Interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=2874533&amp;course-title=Biological%20data%20analysis%20using%20InterMine).'' 2019-06-19 08:30:00 UTC 2019-06-19 11:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] The course is aimed at <b>bench biologists and bioinformaticians</b> who need to analyse their own data against large biological datasetsor who need to search against several biological datasets to gain knowledge of a gene/gene setbiological process or function.Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
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