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17 events found

Content provider: VIB Bioinformatics Core 

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City: Bogota  or Heidelberg  or Ghent  or Buenos Aires 

  • Electronic Lab Notebook Introduction - Ghent

    18 April 2017

    Ghent, Belgium

    Elixir node event
    Electronic Lab Notebook Introduction - Ghent https://tess.elixir-europe.org/events/electronic-lab-notebook-introduction-ghent-638a1f0b-2d27-4f09-b291-72bee6d64baa 2017-04-18 10:00:00 UTC 2017-04-18 12:00:00 UTC VIB Bioinformatics Core PC room V114 1st floor front building VIB-UGent Research Building, Ghent, Belgium PC room V114 1st floor front building VIB-UGent Research Building Ghent Belgium 9052 [] [] [] [] [] []
  • Initiation GIMP and Inkscape Ghent

    2 May 2017

    Ghent, Belgium

    Elixir node event
    Initiation GIMP and Inkscape Ghent https://tess.elixir-europe.org/events/initiation-gimp-and-inkscape-ghent 2017-05-02 09:00:00 UTC 2017-05-02 17:00:00 UTC VIB Bioinformatics Core Bio-Accelerator, Ghent, Belgium Bio-Accelerator Ghent Belgium 9052 [] [] [] [] [] []
  • Initiation GIMP and Inkscape - Ghent

    9 May 2017

    Ghent, Belgium

    Elixir node event
    Initiation GIMP and Inkscape - Ghent https://tess.elixir-europe.org/events/initiation-gimp-and-inkscape-ghent-bd18f6fb-c469-418d-8b9e-bd73e73ce890 2017-05-09 09:00:00 UTC 2017-05-09 17:00:00 UTC VIB Bioinformatics Core Bio-Accelerator Meeting Centre, Ghent, Belgium Bio-Accelerator Meeting Centre Ghent Belgium 9052 [] [] [] [] [] []
  • Protein Structure Analysis

    15 June 2017

    Ghent, Belgium

    Elixir node event
    Protein Structure Analysis https://tess.elixir-europe.org/events/protein-structure-analysis-f095d4f5-e03b-4b1d-9f38-38dff017174a b'\r\n\r\n\n \r\n\r\n\n \r\n\r\n\n' 2017-06-15 09:30:00 UTC 2017-06-15 17:00:00 UTC ELIXIR Belgium VIB-UGent reseach Building FSVM PC room V114 (first floor), Ghent, Belgium VIB-UGent reseach Building FSVM PC room V114 (first floor) Ghent Belgium 9052 [] [] [] [] [] []
  • Functional Plant Bioinformatics - PLAZA

    14 - 15 September 2017

    Ghent, Belgium

    Elixir node event
    Functional Plant Bioinformatics - PLAZA https://tess.elixir-europe.org/events/functional-plant-bioinformatics-plaza 2017-09-14 10:00:00 UTC 2017-09-15 17:00:00 UTC VIB Bioinformatics Core Bio-Accelerator Meeting Center, Ghent, Belgium Bio-Accelerator Meeting Center Ghent Belgium 9052 [] [] [] [] [] []
  • Analysis of metabolome data

    15 January 2018

    Ghent, Belgium

    Elixir node event
    Analysis of metabolome data https://tess.elixir-europe.org/events/analysis-of-metabolome-data This training is intended for people who have a basic knowledge of R. Participants who have never worked with R should first follow the course Basic statistics in R.  The morning session will handle differences affecting data handling between GC-MS and LC-MS.  2018-01-15 09:30:00 UTC 2018-01-15 17:00:00 UTC VIB Bioinformatics Core Bio-Accelerator, Ghent, Belgium Bio-Accelerator Ghent Belgium 9052 [] [] [] [] [] []
  • Quick introduction to RStudio

    23 January 2018

    Ghent, Belgium

    Elixir node event
    Quick introduction to RStudio https://tess.elixir-europe.org/events/quick-introduction-to-rstudio 2018-01-23 10:00:00 UTC 2018-01-23 12:00:00 UTC ELIXIR Belgium VIB-UGent Research Building PC room V114, Ghent, Belgium VIB-UGent Research Building PC room V114 Ghent Belgium 9052 [] [] [] [] [] []
  • Introduction to tidyverse R in Ghent

    7 March 2018

    Ghent, Belgium

    Elixir node event
    Introduction to tidyverse R in Ghent https://tess.elixir-europe.org/events/introduction-to-tidyverse-r-in-ghent The use of R in the data science field has increased enormously in the last few years. One very useful toolkit for a wide variety of analyses is the ‘tidyverse’: a collection of R-packages used for data manipulation, exploration and visualisation that share a common design philosophy. Tidyverse packages are intended to make statisticians and data scientists more productive by guiding them through workflows that facilitate communication, and result in reproducible work products. This is a four hour workshop, were you will learn: The difference between tidy and untidy data How to create tidy datasets and manipulate them using the main tidyr and dplyr verbs Integrate data visualization into your workflow using ggplot2 Use tidyverse functions to research biological problems   Requirements 2018-03-07 13:00:00 UTC 2018-03-07 17:00:00 UTC ELIXIR Belgium Campus: Campus Sterre S8 Victor Van Straelen - (wing B) - ground floor PC-room 0.1, Ghent, Belgium Campus: Campus Sterre S8 Victor Van Straelen - (wing B) - ground floor PC-room 0.1 Ghent Belgium 9000 [] [] [] [] [] []
  • Introduction to Biopython

    29 - 30 March 2018

    Ghent, Belgium

    Elixir node event
    Introduction to Biopython https://tess.elixir-europe.org/events/introduction-to-biopython ​​Understand what Biopython is and what it can do. Learn how to get Biopython running. Learn how to retrieve data records from NCBI. Learn how to read and write sequence files. Learn how to run BLAST from Python and read the results. Learn how to read and write phylogenetic tree files. Learn how to read and write 3D structure files. Learn how to use the Biopython documentation, examples, and where to find help. Understand what alternatives to Biopython exist and what they can do.   Biopython is the best-known Python library to process biological data. This training is aimed to empower you to use Biopython to make your research more efficient. The first day of the training is to give an overview of Biopython. You are going to start with your first steps in Biopython on the command line. Afterwards, you will take a tour of the most important components: sequences, NCBI queries, BLAST, trees, and 3D structures. You will try each of these modules on practical examples. Please don't hesitate to ask questions about Python basics or particular data formats (e.g. XML or NGS data). The second day of the training is to broaden your perspective: What other features does the library have? How can you use the documentation effectively? What is Biopython not capable of?  What can I do to visualize my data? Are there alternatives? If you have your own data that you would like to work on with Biopython in more detail, there is room for that. For me, the most important thing is to identify concrete Python modules and functions that help you to get your research done. Participants are encouraged to submit a description of their research topic and/or the questions they would like to answer with Biopython. Additionally, participants can bring their own data that they would like to process in Python to the training. 2018-03-29 09:30:00 UTC 2018-03-30 17:00:00 UTC VIB Bioinformatics Core BioAccelerator, Ghent, Belgium BioAccelerator Ghent Belgium 9052 [] [] [] [] [] []
  • My code changed and using Git I know where and when

    24 April 2018

    Ghent, Belgium

    Elixir node event
    My code changed and using Git I know where and when https://tess.elixir-europe.org/events/my-code-changed-and-using-git-i-know-where-and-when 2018-04-24 15:00:00 UTC 2018-04-24 18:00:00 UTC VIB Bioinformatics Core Ghent VIB-UGent Research Building LEAF room (E124) right side of the building, first floor, Ghent, Belgium Ghent VIB-UGent Research Building LEAF room (E124) right side of the building, first floor Ghent Belgium 9052 [] [] [] [] [] []
  • A tour of machine learning - classification

    12 June 2018

    Ghent, Belgium

    Elixir node event
    A tour of machine learning - classification https://tess.elixir-europe.org/events/a-tour-of-machine-learning-classification ok Python Numpy/Pandas 2018-06-12 09:30:00 UTC 2018-06-12 17:00:00 UTC VIB Bioinformatics Core Bio-Accelerator, Ghent, Belgium Bio-Accelerator Ghent Belgium 9052 [] [] [] [] [] []
  • Public proteomics data reprocessing and the Tabloid Proteome

    10 October 2018

    Ghent, Belgium

    Elixir node event
    Public proteomics data reprocessing and the Tabloid Proteome https://tess.elixir-europe.org/events/public-proteomics-data-reprocessing-and-the-tabloid-proteome 2018-10-10 09:30:00 UTC 2018-10-10 17:00:00 UTC ELIXIR Belgium VIB-UGent Research Building LEAF room (E124) right side of the building, first floor, Ghent, Belgium VIB-UGent Research Building LEAF room (E124) right side of the building, first floor Ghent Belgium 9052 [] [] [] [] [] []
  • Computing skills for reproducible research: Software Carpentry

    24 - 25 October 2018

    Ghent, Belgium

    Elixir node event
    Computing skills for reproducible research: Software Carpentry https://tess.elixir-europe.org/events/computing-skills-for-reproducible-research-software-carpentry After the workshop, participants will be able to: write and organise their own scripts for data analysis use version control to keep track of, and revert changes to their files run scripts from the command line 2018-10-24 09:00:00 UTC 2018-10-25 17:00:00 UTC ELIXIR Belgium Ghent, Ghent, Belgium Ghent Ghent East Flanders Belgium 9000 [] [] Researchers [] [] []
  • Linux for bioinformatics

    5 - 12 November 2018

    Ghent, Belgium

    Elixir node event
    Linux for bioinformatics https://tess.elixir-europe.org/events/linux-for-bioinformatics b'\nAfter this training you will\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\n\r\n \r\nfeel comfortable using Linux \r\n\r\n \r\nknow how software works on Linux and how to install and use it  \r\n\r\n \r\nuse bash to execute\r\n commands in Linux and know your way around the file system\r\n\r\n \r\nhave an overview of Linux tools that are extremely useful for bioinformatics\r\n\r\n\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n \r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\nSummary\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\nThis training is intended for all Linux novices who\r\nwant to learn the basics of Linux without getting too much technical details.\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\nThis hands-on training will show you how to\r\neffectively use Linux Ubuntu. Bioinformatics depends heavily on Linux-based computers and software. A lot of good scientific\r\nsoftware is written specifically for Linux. Additionally, Linux has most popular programming languages (e.g.Python, Perl, C) already installed and\r\nready to use! This\r\ntraining will teach you all you need to know to swiftly start using Linux, be it on the server of your department, or on your own computer (even if you\'re already running\r\nWindows or MacOS).\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n \r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\nTentative schedule​\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\nPrior to the training session, you will receive a poll to ask you your personal goals by following this training sesion. Depending on the outcome, the schedule will be adjusted.\r\n \r\n\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\nDay 1\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\n\r\n \r\nUNIX fundamentals and other Linux distributions\r\n\r\n \r\nInstall\r\n Linux distributions: test it harmlessly by running in live mode\r\n\r\n \r\nDifferent methods of\r\n installing software and where to get it\r\n\r\n \r\nThe UNIX file system \r\n\r\n \r\nLUNCH\r\n\r\n \r\nUsers on Linux and  access rights to view, create and execute\r\n\r\n \r\nGentle introduction\r\n to the command line in linux\r\n\r\n \r\n\n\r\n \r\nbasics\r\n of the command line\r\n\r\n \r\nbest tips enhancing\r\n your command line experience\r\n\r\n \r\nreading and writing\r\n contents in the command line\r\n\r\n \n\r\n\r\n\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\nDay 2\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\n\r\n \r\nBioinformatics in Linux\r\n\r\n \r\n\n\r\n \r\ninstalling useful\r\n bioinformatics and programming tools\r\n\r\n \r\nanalysing text\r\n output from bioinformatics tools\r\n\r\n \r\npassing outputs from\r\n and to different tools \r\n\r\n \r\nscripting\r\n in Linux\r\n\r\n \n\r\n\r\n \r\nLUNCH\r\n\r\n \r\nLinux\r\n in a network\r\n\r\n\r\nLinux playground: Open questions. Play around with your Linux to make it fit your (bioinformatics)\r\n needs. ​​​​​​​​​​​​​​​​​​\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n​​\n\r\n​​​​​\n \r\n\r\n\n \r\n\r\n\n' 2018-11-05 09:30:00 UTC 2018-11-12 17:00:00 UTC VIB Bioinformatics Core Bio-Accelerator, Ghent, Belgium Bio-Accelerator Ghent Belgium 9052 [] [] [] [] [] []
  • Electronic Lab Notebook Introduction - Ghent

    14 November 2018

    Ghent, Belgium

    Elixir node event
    Electronic Lab Notebook Introduction - Ghent https://tess.elixir-europe.org/events/electronic-lab-notebook-introduction-ghent 2018-11-14 10:00:00 UTC 2018-11-14 12:00:00 UTC VIB Bioinformatics Core PC room V114 - 1st floor front building VIB-UGent Research Building, Ghent, Belgium PC room V114 - 1st floor front building VIB-UGent Research Building Ghent Belgium 9052 [] [] [] [] [] []
  • Basic statistics in R, Ghent

    15 - 29 January 2019

    Ghent, Belgium

    Elixir node event
    Basic statistics in R, Ghent https://tess.elixir-europe.org/events/basic-statistics-in-r-ghent b'\nGet an idea of what R and Rstudio is\r\nUse R to handle data: creating, reading, reformatting and writing data\r\nUse R to create graphics\r\nUse basic statistical techniques in R : normality tests, t-tests, wilcoxon tests, chi square tests, correlations, survival analysis...\r\nWrite and use R scripts\n\r\n\n \nThis training gives an introduction to the use of the statistical software language R. R is a language for data analysis and graphics. This introduction to R is aimed at beginners. The training covers data handling, graphics, and basic statistical techniques. \r\nR is for free and for more information you can visit the site the CRAN web site.This training is an introduction to the use of R and RStudio and stops at very basic analyses (t-tests and non-parametric equivalents). A full overview of statistical analyses in R including regression, ANOVA will be given in the follow-up training Basic statistics in R, part II.\n\r\n \r\nRequirements\r\nThe training is intended for people who have no experience with R. However, understanding of basic statistical concepts is required, such as data types, normal distribution, descriptive statistics, tests for comparing groups... If you don\'t have sufficient statistical background you are strongly encouraged to attend the Basic statistics theorytraining. \r\nThis training is recommended for people with no experience in R who are planning to follow a training that requires some R background, like the mass spectrometry , the single cell RNA-Seq and the bulk RNA-Seq training....\n\r\n\n' 2019-01-15 09:30:00 UTC 2019-01-29 17:00:00 UTC VIB Bioinformatics Core Bio-Accelerator, Ghent, Belgium Bio-Accelerator Ghent Belgium 9052 [] [] [] [] [] []
  • Analysis of single cell RNA-Seq data from 10x Genomics

    4 - 5 February 2019

    Ghent, Belgium

    Elixir node event
    Analysis of single cell RNA-Seq data from 10x Genomics https://tess.elixir-europe.org/events/analysis-of-single-cell-rna-seq-data-from-10x-genomics 2019-02-04 09:30:00 UTC 2019-02-05 17:00:00 UTC VIB Bioinformatics Core iGent Tower, Ghent, Belgium iGent Tower Ghent Belgium 9052 [] [] [] [] [] []
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