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17 events found

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  • Introduction to Genomic Variant Interpretation

    30 - 31 May 2019

    Sheffield, United Kingdom

    Introduction to Genomic Variant Interpretation https://tess.elixir-europe.org/events/introduction-to-identifying-and-characterising-variants-from-ngs-data-bfeba574-0bba-47f5-9de9-fdabc6d50ce4 This course covers state-of-the-art and best-practice tools for the analysis of genomes. We describe, and give hands-on experience of, the entire analysis workflow from raw data generated by a sequencing machine to deriving variant calls (e.g. Single Nucleotide Variants) that are ready for downstream analysis, interpretation and prioritisation. We will describe the steps involved to go from sequencing library to a prioritised, clinically-relevant list of DNA variants. Practical sessions will use the user-friendly Galaxy interface (https://usegalaxy.org/) to demonstrate tasks such as alignment, quality control, variant-calling and annotation. 2019-05-30 08:30:00 UTC 2019-05-31 16:00:00 UTC The Diamond, Workroom 1, Sheffield, United Kingdom The Diamond, Workroom 1 Sheffield United Kingdom S3 7RD [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] []
  • RNA-seq Analysis for Beginners

    10 June 2019

    Sheffield, United Kingdom

    RNA-seq Analysis for Beginners https://tess.elixir-europe.org/events/rna-seq-analysis-for-beginners High-throughput RNA-sequencing is now the standard technique for quantifying transcript abundance in a biological sample of interest. In this course we will describe the processes that take place once you submit a library for RNA sequencing, and what data you should expect to receive from the Bioinformatics Core. We will describe the steps involved to go from sequencing library to a list of genes that show statistically significant differences between your biological conditions of interest. Practical sessions will use the user-friendly Galaxy interface (https://usegalaxy.org/) to demonstrate tasks such as alignment, quality control and assessing differential expression. We will also showcase some web sites you can use for enrichment and pathways analysis. 2019-06-10 08:30:00 UTC 2019-06-10 16:00:00 UTC The Diamond, Workroom 1, Sheffield, United Kingdom The Diamond, Workroom 1 Sheffield United Kingdom S3 7RD [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] []
  • Introduction to RNA-seq analysis in R

    24 June 2019

    Sheffield, United Kingdom

    Introduction to RNA-seq analysis in R https://tess.elixir-europe.org/events/introduction-to-rna-seq-analysis-in-r-4ff2ae93-b96a-4dc0-8f92-957042a88c1d In this workshop, you will be learning how to analyse RNA-seq count data, using R. This will include reading the data into R, quality control and performing differential expression analysis and gene set testing, with a focus on the edgeR analysis workflow. You will learn how to generate common plots for analysis and visualisation of gene expression data, such as boxplots and heatmaps. You will also be learning how alignment and counting of raw RNA-seq data can be performed in R. This workshop is aimed at biologists interested in learning how to perform differential expression analysis of RNA-seq data when reference genomes are available.. 2019-06-24 08:30:00 UTC 2019-06-24 16:00:00 UTC The Diamond, Workroom 1, Sheffield, United Kingdom The Diamond, Workroom 1 Sheffield United Kingdom S3 7RD [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] []
  • Sharing Bioinformatics Training and Building a Region-wide Programme

    9 - 10 July 2019

    Sheffield, United Kingdom

    Sharing Bioinformatics Training and Building a Region-wide Programme https://tess.elixir-europe.org/events/sharing-bioinformatics-training-and-building-a-region-wide-programme High-throughput genomic data analysis is now a defining skill in the life sciences. There is already a shortage of researchers who can bridge the gap between computational approaches to data and biological insights, and this demand is only getting stronger. Bioinformatics training is under-provisioning in the North of England, with many small Bioinformatics teams at different institutes lacking the resources to deliver a full Bioinformatics training programme. 2019-07-09 09:30:00 UTC 2019-07-10 14:30:00 UTC Sheffield, United Kingdom Sheffield United Kingdom [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] []
  • NGS Platforms: how data generation impacts bioinformatics analysis? - Quality Control (1 day)

    29 July 2019

    Brisbane, Australia

    NGS Platforms: how data generation impacts bioinformatics analysis? - Quality Control (1 day) https://tess.elixir-europe.org/events/analysis-of-ngs-data-workshops-with-galaxy-2ff9b072-1103-4692-843f-ea46c80b0b82 2019-07-29 09:00:00 UTC 2019-07-29 17:00:00 UTC QFAB Translational Research Institute, 37, Kent Street, Brisbane, Australia Translational Research Institute, 37, Kent Street Brisbane Brisbane City Australia [] [] [] [] [] bioinformaticsGalaxy
  • Genome assembly using Galaxy (1 day)

    30 July 2019

    Brisbane, Australia

    Genome assembly using Galaxy (1 day) https://tess.elixir-europe.org/events/analysis-of-ngs-data-workshops-with-galaxy-f678f24b-9a45-4be8-a024-c4d604e4375c 2019-07-30 09:00:00 UTC 2019-07-30 17:00:00 UTC QFAB Translational Research Institute, 37, Kent Street, Brisbane, Australia Translational Research Institute, 37, Kent Street Brisbane Brisbane City Australia [] [] [] [] [] bioinformaticsGalaxy RNA-Seq
  • RNA Seq analysis using Galaxy (1 day)

    31 July 2019

    Brisbane, Australia

    RNA Seq analysis using Galaxy (1 day) https://tess.elixir-europe.org/events/analysis-of-ngs-data-workshops-with-galaxy-beef95ab-2c30-4e05-9c16-f9e3c7efd073 2019-07-31 09:00:00 UTC 2019-07-31 17:00:00 UTC QFAB Translational Research Institute, 37, Kent Street, Brisbane, Australia Translational Research Institute, 37, Kent Street Brisbane Brisbane City Australia Bioinformatics [] [] [] [] [] bioinformaticsGalaxy RNA-Seq
  • Variant detection using Galaxy (1 day)

    1 August 2019

    Brisbane, Australia

    Variant detection using Galaxy (1 day) https://tess.elixir-europe.org/events/analysis-of-ngs-data-workshops-with-galaxy-4180d7b9-2047-4c2c-9273-550fdd06284a 2019-08-01 09:00:00 UTC 2019-08-01 17:00:00 UTC QFAB Translational Research Institute, 37, Kent Street, Brisbane, Australia Translational Research Institute, 37, Kent Street Brisbane Brisbane City Australia Bioinformatics [] [] [] [] [] bioinformaticsGalaxy RNA-Seq
  • Metagenomics analysis using Galaxy (1 day)

    2 August 2019

    Brisbane, Australia

    Metagenomics analysis using Galaxy (1 day) https://tess.elixir-europe.org/events/analysis-of-ngs-data-workshops-with-galaxy-04eee91c-0212-4e44-aeb0-7ea8b80c1370 2019-08-02 09:00:00 UTC 2019-08-02 17:00:00 UTC QFAB Translational Research Institute, 37, Kent Street, Brisbane, Australia Translational Research Institute, 37, Kent Street Brisbane Brisbane City Australia [] [] [] [] [] bioinformaticsGalaxy RNA-Seq
  • Genome assembly using the command line (2 days)

    20 - 21 August 2019

    Brisbane, Australia

    Genome assembly using the command line (2 days) https://tess.elixir-europe.org/events/genome-assembly-using-the-command-line-2-days 2019-08-20 09:00:00 UTC 2019-08-21 17:00:00 UTC QFAB Brisbane, Australia Brisbane Australia Bioinformatics [] [] [] [] [] bioinformaticsGalaxy RNA-Seq
  • NGS Platforms: how data generation impacts bioinformatics analysis? - Quality Control (1 day)

    23 September 2019

    Brisbane, Australia

    NGS Platforms: how data generation impacts bioinformatics analysis? - Quality Control (1 day) https://tess.elixir-europe.org/events/analysis-of-ngs-data-workshops-with-galaxy-fe6e1892-806d-4078-979a-71e5b2ae842a 2019-09-23 09:00:00 UTC 2019-09-23 17:00:00 UTC QFAB Translational Research Institute, 37, Kent Street, Brisbane, Australia Translational Research Institute, 37, Kent Street Brisbane Brisbane City Australia Bioinformatics [] [] [] [] [] bioinformaticsGalaxy
  • Genome assembly using Galaxy (1 day)

    24 September 2019

    Brisbane, Australia

    Genome assembly using Galaxy (1 day) https://tess.elixir-europe.org/events/analysis-of-ngs-data-workshops-with-galaxy-5e8d0966-8ee8-4d64-8663-c49d25525a60 2019-09-24 09:00:00 UTC 2019-09-24 17:00:00 UTC QFAB Translational Research Institute, 37, Kent Street, Brisbane, Australia Translational Research Institute, 37, Kent Street Brisbane Brisbane City Australia Bioinformatics [] [] [] [] [] bioinformaticsGalaxy RNA-Seq
  • RNA Seq analysis using Galaxy (1 day)

    25 September 2019

    Brisbane, Australia

    RNA Seq analysis using Galaxy (1 day) https://tess.elixir-europe.org/events/analysis-of-ngs-data-workshops-with-galaxy-ad768f51-e8ab-4c04-83a3-388fec5ae25b 2019-09-25 09:00:00 UTC 2019-09-25 17:00:00 UTC QFAB Translational Research Institute, 37, Kent Street, Brisbane, Australia Translational Research Institute, 37, Kent Street Brisbane Brisbane City Australia Bioinformatics [] [] [] [] [] bioinformaticsGalaxy RNA-Seq
  • Variant detection using Galaxy (1 day)

    26 September 2019

    Brisbane, Australia

    Variant detection using Galaxy (1 day) https://tess.elixir-europe.org/events/analysis-of-ngs-data-workshops-with-galaxy-377372e4-b0dd-425d-8ae7-1ef5d902d26b 2019-09-26 09:00:00 UTC 2019-09-26 17:00:00 UTC QFAB Translational Research Institute, 37, Kent Street, Brisbane, Australia Translational Research Institute, 37, Kent Street Brisbane Brisbane City Australia Bioinformatics [] [] [] [] [] bioinformaticsGalaxy RNA-Seq
  • Metagenomics analysis using Galaxy (1 day)

    27 September 2019

    Brisbane, Australia

    Metagenomics analysis using Galaxy (1 day) https://tess.elixir-europe.org/events/analysis-of-ngs-data-workshops-with-galaxy-aa7d8414-431f-4b57-8416-bb05ac1389da 2019-09-27 09:00:00 UTC 2019-09-27 17:00:00 UTC QFAB Translational Research Institute, 37, Kent Street, Brisbane, Australia Translational Research Institute, 37, Kent Street Brisbane Brisbane City Australia Bioinformatics [] [] [] [] [] bioinformaticsGalaxy RNA-Seq
  • Assembly of long-read sequencing (2 days)

    12 - 13 November 2019

    Brisbane, Australia

    Assembly of long-read sequencing (2 days) https://tess.elixir-europe.org/events/assembly-of-long-read-sequencing-2-days-a1383ac8-7ceb-429e-9360-61be939cbcdb 2019-11-12 09:00:00 UTC 2019-11-13 17:00:00 UTC QFAB Brisbane, Australia Brisbane Australia Bioinformatics [] [] [] [] [] bioinformatics RNA-SeqGalaxy
  • RNA-Seq using R (2 days - Knowledge of R required)

    3 - 4 December 2019

    Brisbane, Australia

    RNA-Seq using R (2 days - Knowledge of R required) https://tess.elixir-europe.org/events/analysis-of-ngs-data-workshops-advanced-393853d7-8b13-4f51-b774-afb159f5d818 2019-12-03 09:00:00 UTC 2019-12-04 17:00:00 UTC QFAB Translational Research Institute, 37, Kent Street, Brisbane, Australia Translational Research Institute, 37, Kent Street Brisbane Brisbane City Australia Bioinformatics [] [] [] [] [] bioinformaticsGalaxy RNA-Seq
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