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7 events found

City: Bogota  or Gent  or Sheffield 

  • Introduction to MPI

    24 April 2019

    Gent, Belgium

    Elixir node event
    Introduction to MPI https://tess.elixir-europe.org/events/introduction-to-mpi-e4ad348e-1130-45c5-8675-7dea87bf29c5 b'Introduction to a standardized library specification for message passing between different processes\r\n\n More info at https://www.ugent.be/hpc/en/training/materials/2019/mpi\r\n\r\n\r\n \n \n Detailed time/place info\n \r\n \n Wednesday April 24th 2019\r\n \n' 2019-04-24 09:00:00 UTC 2019-04-24 00:00:00 UTC Multimediaroom campus de Sterre S9, Gent, Belgium Multimediaroom campus de Sterre S9 Gent Belgium 9000 [] [] [] [] [] []
  • Introduction to identifying and characterising somatic variants

    10 May 2019

    Sheffield, United Kingdom

    Introduction to identifying and characterising somatic variants https://tess.elixir-europe.org/events/introduction-to-identifying-and-characterising-somatic-variants This course covers state-of-the-art and best-practice tools for the analysis of genomes. We describe, and give hands-on experience of, the entire analysis workflow from raw data generated by a sequencing machine to deriving variant calls (e.g. Single Nucleotide Variants) that are ready for downstream analysis, interpretation and prioritisation. We will describe the steps involved to go from sequencing library to a prioritised, clinically-relevant list of DNA variants. Practical sessions will use the user-friendly Galaxy interface (https://usegalaxy.org/) to demonstrate tasks such as alignment, quality control, variant-calling and annotation. 2019-05-10 08:30:00 UTC 2019-05-10 16:00:00 UTC Pam Liversidge Design Studio 1 - D06, Sheffield, United Kingdom Pam Liversidge Design Studio 1 - D06 Sheffield United Kingdom S1 3JD [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] []
  • Introduction to Genomic Variant Interpretation

    30 - 31 May 2019

    Sheffield, United Kingdom

    Introduction to Genomic Variant Interpretation https://tess.elixir-europe.org/events/introduction-to-identifying-and-characterising-variants-from-ngs-data-bfeba574-0bba-47f5-9de9-fdabc6d50ce4 This course covers state-of-the-art and best-practice tools for the analysis of genomes. We describe, and give hands-on experience of, the entire analysis workflow from raw data generated by a sequencing machine to deriving variant calls (e.g. Single Nucleotide Variants) that are ready for downstream analysis, interpretation and prioritisation. We will describe the steps involved to go from sequencing library to a prioritised, clinically-relevant list of DNA variants. Practical sessions will use the user-friendly Galaxy interface (https://usegalaxy.org/) to demonstrate tasks such as alignment, quality control, variant-calling and annotation. 2019-05-30 08:30:00 UTC 2019-05-31 16:00:00 UTC The Diamond, Workroom 1, Sheffield, United Kingdom The Diamond, Workroom 1 Sheffield United Kingdom S3 7RD [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] []
  • RNA-seq Analysis for Beginners

    10 June 2019

    Sheffield, United Kingdom

    RNA-seq Analysis for Beginners https://tess.elixir-europe.org/events/rna-seq-analysis-for-beginners High-throughput RNA-sequencing is now the standard technique for quantifying transcript abundance in a biological sample of interest. In this course we will describe the processes that take place once you submit a library for RNA sequencing, and what data you should expect to receive from the Bioinformatics Core. We will describe the steps involved to go from sequencing library to a list of genes that show statistically significant differences between your biological conditions of interest. Practical sessions will use the user-friendly Galaxy interface (https://usegalaxy.org/) to demonstrate tasks such as alignment, quality control and assessing differential expression. We will also showcase some web sites you can use for enrichment and pathways analysis. 2019-06-10 08:30:00 UTC 2019-06-10 16:00:00 UTC The Diamond, Workroom 1, Sheffield, United Kingdom The Diamond, Workroom 1 Sheffield United Kingdom S3 7RD [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] []
  • International Conference on Polyploidy

    11 - 14 June 2019

    Gent, Belgium

    Elixir node event
    International Conference on Polyploidy https://tess.elixir-europe.org/events/international-conference-on-polyploidy The International Conference on Polyploidy will present cutting edge research into the importance of polyploidy and whole genome duplication for genetics, evolution and ecology. For the 2019 meeting, which will take place at the beautiful city of Ghent, we are trying to put together an exciting program focusing on many different aspects of polyploidy, such as the short- and long-term ecological and evolutionary consequence of polyploidy for plant and animal systems, but also polyploidy in somatic cells and clonal populations will be discussed. The International Conference on Polyploidy will present a unique opportunity to meet and discuss with colleagues, get updated on the newest developments and insights into recent and ancient polyploidy and whole genome duplication, and will provide unique possibilities to network and discuss collaborations. We are delighted to announce that Dr. Ilia Leitch (Kew Gardens) has agreed to deliver the plenary lecture on Tuesday afternoon, June 11th, opening the meeting. Poster information: Format: A0 (841 x 1189 mm / 33.1 x 46.8 in), portrait orientation 2019-06-11 09:00:00 UTC 2019-06-14 17:00:00 UTC VIB Conferences Universiteit Gent - Het Pand, Onderbergen1 , 9000 Gent, Gent, Belgium Universiteit Gent - Het Pand, Onderbergen1 , 9000 Gent Gent Oost-Vlaanderen Belgium 9000 [] VIB Conferences conferences@vib.be FWO [] meetings_and_conferences first_come_first_served Polyploidyshort- and long-term ecological and evolutionary consequencepolyploidy for plant and animal systemspolyploidy in somatic cellsclonal populations
  • Introduction to RNA-seq analysis in R

    24 June 2019

    Sheffield, United Kingdom

    Introduction to RNA-seq analysis in R https://tess.elixir-europe.org/events/introduction-to-rna-seq-analysis-in-r-4ff2ae93-b96a-4dc0-8f92-957042a88c1d In this workshop, you will be learning how to analyse RNA-seq count data, using R. This will include reading the data into R, quality control and performing differential expression analysis and gene set testing, with a focus on the edgeR analysis workflow. You will learn how to generate common plots for analysis and visualisation of gene expression data, such as boxplots and heatmaps. You will also be learning how alignment and counting of raw RNA-seq data can be performed in R. This workshop is aimed at biologists interested in learning how to perform differential expression analysis of RNA-seq data when reference genomes are available.. 2019-06-24 08:30:00 UTC 2019-06-24 16:00:00 UTC The Diamond, Workroom 1, Sheffield, United Kingdom The Diamond, Workroom 1 Sheffield United Kingdom S3 7RD [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] []
  • HPC@UGent introduction

    1 September 2019

    Gent, Belgium

    Elixir node event
    HPC@UGent introduction https://tess.elixir-europe.org/events/hpc-ugent-introduction-8ef0caf3-00a6-4e88-8e50-9b3034fadae9 b'Quick introductory training jump starting new researchers to work on the supercomputing infrastructure of Ghent UniversityWednesday Jan 9th 2019, 10am - 5pmsee also https://www.ugent.be/hpc/en/training/materials/2019/introhpcugent\r\n\r\n \n' 2019-09-01 09:00:00 UTC 2019-09-01 00:00:00 UTC Multimediaroom campus de Sterre S9, Gent, Belgium Multimediaroom campus de Sterre S9 Gent Belgium 9000 [] [] [] [] [] []
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