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58 events found

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  • Life Sciences Frontiers

    22 November 2012

    Uppsala, Sweden

    Life Sciences Frontiers https://tess.elixir-europe.org/events/life-sciences-frontiers 2012-11-22 00:00:00 UTC 2012-11-22 00:00:00 UTC Economist Conferences Uppsala, Sweden Uppsala Sweden Medicine [] [] [] meetings_and_conferences [] []
  • 2nd TEM Spectroscopy Workshop in Materials Science

    18 - 20 May 2015

    Uppsala, Sweden

    2nd TEM Spectroscopy Workshop in Materials Science https://tess.elixir-europe.org/events/2nd-tem-spectroscopy-workshop-in-materials-science 2015-05-18 01:00:00 UTC 2015-05-20 01:00:00 UTC Uppsala, Sweden Uppsala Sweden Systems biology [] [] [] meetings_and_conferences [] []
  • Second EMBO Conference in Aquatic Microbial Ecology: SAME14

    23 - 28 August 2015

    Uppsala, Sweden

    Second EMBO Conference in Aquatic Microbial Ecology: SAME14 https://tess.elixir-europe.org/events/second-embo-conference-in-aquatic-microbial-ecology-same14 2015-08-23 01:00:00 UTC 2015-08-28 01:00:00 UTC Uppsala, Sweden Uppsala Sweden Systems biology [] [] [] meetings_and_conferences [] Ecology
  • NGS data analysis course, Pontificia Universidad Javeriana, Bogota, November 2015

    23 - 24 November 2015

    Bogota, Colombia

    Elixir node event
    NGS data analysis course, Pontificia Universidad Javeriana, Bogota, November 2015 https://tess.elixir-europe.org/events/ngs-data-analysis-course-pontificia-universidad-javeriana-bogota-november-2015 This course is organised for professionals in life sciences and biomedical sciences, preferably researchers or graduate students who are conducting or planning to conduct investigations that require the bioinformatic analysis of data from omics technologies of high throughput sequencing or next generation (NGS). 2015-11-23 16:15:00 UTC 2015-11-24 16:15:00 UTC Pontificia Universidad Javeriana, Bogota, Colombia Pontificia Universidad Javeriana Bogota Colombia [] Maria Bacadare Goitia [] [] [] [] []
  • Installing and configuring Linux Ubuntu for bioinformatics

    7 April 2016

    Canberra, Australia

    Installing and configuring Linux Ubuntu for bioinformatics https://tess.elixir-europe.org/events/installing-and-configuring-linux-ubuntu-for-bioinformatics CBBU, COMBINE, and SCU are organizing a series of introductory bioinformatics and statistics workshops. The workshops are primarily aimed at students, postdocs and early-mid career researchers, but are open to everybody from our College. 2016-04-07 09:00:00 UTC 2016-04-07 00:00:00 UTC Australian National University Canberra, Australia Canberra Australia Bioinformatics [] [] [] workshops_and_courses [] ABRBioinformatics
  • Software Carpentry Introduction to Programming with R and Use of Unix Shell and Git, plus Data Carpentry Processing and Visualization of Genomic Datasets

    11 - 13 April 2016

    Canberra, Australia

    Software Carpentry Introduction to Programming with R and Use of Unix Shell and Git, plus Data Carpentry Processing and Visualization of Genomic Datasets https://tess.elixir-europe.org/events/software-carpentry-introduction-to-programming-with-r-and-use-of-unix-shell-and-git-plus-data-carpentry-processing-and-visualization-of-genomic-datasets Workshops in bioinformatics and statistics CBBU, COMBINE, and SCU are organizing a series of introductory bioinformatics and statistics workshops. The workshops are primarily aimed at students, postdocs and early-mid career researchers, but are open to everybody from our College. 2016-04-11 09:00:00 UTC 2016-04-13 00:00:00 UTC Australian National University Canberra, Australia Canberra Australia Bioinformatics Data visualisation Data management [] [] [] workshops_and_courses [] ABRBioinformaticsSoftwareCarpentry
  • Experimental design and statistics

    17 May 2016

    Canberra, Australia

    Experimental design and statistics https://tess.elixir-europe.org/events/experimental-design-and-statistics This workshop will be run in the form of five 2-hour long sessions. There will be two sessions per week starting from mid-May. Preliminary dates are May 17th, 20th, 24th, 27th, and June 3rd. The times and venues are: Tue May 17 - 1 - 3pm, Slatyer Seminar Room Fri May 20 - 10am - 12pm, Gould Seminar Room Tue May 24 - 1 - 3pm, RN Robertson boardroom Fri May 27 - 10am - 12pm, Slatyer Seminar Room Fri Jun 3 - 10am - 12pm in STB-S1 at The Sciences Teaching Bldg. 2016-05-17 09:00:00 UTC 2016-05-17 00:00:00 UTC Australian National University Canberra, Australia Canberra Australia Data architecture, analysis and design Bioinformatics [] [] [] workshops_and_courses [] ABRBioinformatics
  • Software carpentry introduction to programming with Python and use of Unix Shell and Git

    30 May - 1 June 2016

    Canberra, Australia

    Software carpentry introduction to programming with Python and use of Unix Shell and Git https://tess.elixir-europe.org/events/software-carpentry-introduction-to-programming-with-python-and-use-of-unix-shell-and-git Workshops in bioinformatics and statistics CBBU, COMBINE, and SCU are organizing a series of introductory bioinformatics and statistics workshops. The workshops are primarily aimed at students, postdocs and early-mid career researchers, but are open to everybody from our College. This workshop is for novices and doesn't require any prior knowledge in Python, Git or Shell. The cost is $90 AUD to cover lunches and teas. It possible to pay with the GLC or bank transfer. Anybody interested please register no later than 22 May. 2016-05-30 09:00:00 UTC 2016-06-01 00:00:00 UTC Australian National University Canberra, Australia Canberra Australia Bioinformatics Data architecture, analysis and design [] [] [] workshops_and_courses [] ABRBioinformaticsSoftwareCarpentry
  • Understanding the Function of Human Genome Variation

    31 May - 4 June 2016

    Uppsala, Sweden

    Understanding the Function of Human Genome Variation https://tess.elixir-europe.org/events/understanding-the-function-of-human-genome-variation 2016-05-31 01:00:00 UTC 2016-06-04 01:00:00 UTC Uppsala, Sweden Uppsala Sweden Genomics [] [] [] meetings_and_conferences [] []
  • Detecting Mutations with Short-Read Sequencing

    15 July 2016

    Canberra, Australia

    Detecting Mutations with Short-Read Sequencing https://tess.elixir-europe.org/events/detecting-mutations-with-short-read-sequencing Reed A. Cartwright, Arizona State University Studying the process of de novo mutation from deep-sequencing of related samples is a difficult task. Because de novos are rare, artifacts generated by experimental and biological error tend to be more common than true positives. While de novos can be identified through validation, this is a slow process. In order to estimate mutation rates on large datasets in an automated way, we need to develop new probabilistic models that can handle sources of false positives. In this talk I will be discussing new computational methods to detect de novo mutations and their application to three different systems: human trios, ciliate mutation accumulation experiments, and yellow box eucalyptus. TIC Techniques In Computational Genomics A community of researchers engaged in, or dependent on, computational analysis of genomic data Weekly seminars by volunteers Drop-in sessions/round-table discussions convened by the Genome Discovery Unit (GDU) Venue alternates between JCSMR and RSB, ANU. To be added to TIC email list please contact marcin.adamski@anu.edu.au 2016-07-15 09:00:00 UTC 2016-07-15 00:00:00 UTC Australian National University Canberra, Australia Canberra Australia Computational biology Bioinformatics [] [] [] meetings_and_conferences [] BioinformaticsABR
  • Introduction to R and RStudio

    31 October 2016

    Canberra, Australia

    Introduction to R and RStudio https://tess.elixir-europe.org/events/introduction-to-r-and-rstudio Introduction to R and RStudio co-organized with Teresa Neeman from Australian National University Statistical Consulting Unit. The workshop will be over 2 half-days 31/10 and 1/11 9:30am - 1:30pm, and will cover basic concepts in R, including: introduction to R and RStudio, importing and graphing data, basic data processing, and statistics, good coding practice. The short course will help you to be more confident using R and will prepare you for understanding statistical modelling in R. This workshop is for R and RStudio novices. No previous experience in R or RStudio is expected. We especially invite mid-year honours students. Please note that this workshop was already advertised to honours students by Giel Van Dooren. To sign up please email no later than October 7th. The workshops are offered at no cost. 2016-10-31 09:00:00 UTC 2016-10-31 00:00:00 UTC Australian National University Canberra, Australia Canberra Australia Data visualisation Data management [] [] [] workshops_and_courses [] ABRBioinformatics
  • Data Processing in R for beginners

    8 November 2016

    Canberra, Australia

    Data Processing in R for beginners https://tess.elixir-europe.org/events/data-processing-in-r-for-beginners Data Processing in R for beginners co-organized with Janet Gardner from EEG. This will be a 6 hours workshop on 8/11 9:30 - 12:30 - lunch break - 1:00pm - 4:00pm and will be covering: Brief introduction to R and RStudio. Data types in R, and type conversions. Loading and saving tab and coma delimited files. Data exploration: basic statistic (mean, std. deviation and so on), basic plots (dotplots and histograms). Data sub-setting and filtering. Adding new columns with calculated values. Find-and-replace for values in a column. Detecting and handling errors an missing values in the data. Designing an appropriate structure for a spreadsheet. Joining datasets. Programming - creating functions in R. To sign up please email marcin.adamski@anu.edu.au no later than October 7th. The workshops are offered at no cost. 2016-11-08 09:00:00 UTC 2016-11-08 00:00:00 UTC Australian National University Canberra, Australia Canberra Australia Bioinformatics Data visualisation Data management [] [] [] workshops_and_courses [] ABRBioinformatics
  • Introduction to Image Analysis

    14 November 2016

    Uppsala

    Elixir node event
    Introduction to Image Analysis https://tess.elixir-europe.org/events/introduction-to-image-analysis 2016-11-14 00:00:00 UTC 2016-11-14 00:00:00 UTC Uppsala Uppsala [] [] [] workshops_and_courses [] []
  • Data Processing in R for advanced users

    15 November 2016

    Canberra, Australia

    Data Processing in R for advanced users https://tess.elixir-europe.org/events/data-processing-in-r-for-advanced-users Data Processing in R for advanced users co- organized with Janet Gardner from EEG. This will be a 6 hours workshop on 15/11 9:30 - 12:30 - lunch break - 1:00pm - 4:00pm covering the same subjects as workshop #2 but will be much more focused on writing code (programming in R) and practical exercises and will skip the basics. To sign up please email marcin.adamski@anu.edu.au no later than October 7th. The workshops are offered at no cost. 2016-11-15 09:00:00 UTC 2016-11-15 00:00:00 UTC Australian National University Canberra, Australia Canberra Australia Bioinformatics Data visualisation Data management [] [] [] workshops_and_courses [] ABRBioinformatics
  • Metagenomics, 1 hp

    22 - 23 November 2016

    Uppsala

    Elixir node event
    Metagenomics, 1 hp https://tess.elixir-europe.org/events/metagenomics-1-hp 2016-11-22 00:00:00 UTC 2016-11-23 00:00:00 UTC Uppsala Uppsala [] [] [] workshops_and_courses [] []
  • R Programming Foundations for Life Scientists, 2 hp

    28 November - 2 December 2016

    Uppsala

    Elixir node event
    R Programming Foundations for Life Scientists, 2 hp https://tess.elixir-europe.org/events/r-programming-foundations-for-life-scientists-2-hp 2016-11-28 09:00:00 UTC 2016-12-02 00:00:00 UTC Uppsala Uppsala [] [] [] workshops_and_courses [] []
  • UPPMAX Introductory Course Winter 2017

    9 - 12 January 2017

    Uppsala

    Elixir node event
    UPPMAX Introductory Course Winter 2017 https://tess.elixir-europe.org/events/uppmax-introductory-course-winter-2017 2017-01-09 09:00:00 UTC 2017-01-12 00:00:00 UTC Uppsala Uppsala [] [] [] workshops_and_courses [] []
  • Bioinformatics Introductory course

    16 January - 21 March 2017

    Uppsala, Sweden

    Bioinformatics Introductory course https://tess.elixir-europe.org/events/bioinformatics-introductory-course Objective: The course aims to give a solid basis in basic bioinformatics methods. It covers the theories, algorithms and practical applications of computer-based methodology for the analysis of Nucleic and protein sequences. On completion of the course, the student should be able to: - account for the fundamental concepts within bioinformatics - independently carry out homology analyses of both protein - and DNA sequences and interpret the results - use the most common commands in Unix/Linux, - independently build a "workbench" for bioinformatics with publicly available software suited to the students own needs, - use biological databases - independently use technologies and analysis of Next Generation Sequencing data. and - manage methods for the analysis of expression data. Content: The course covers bioinformatics methods such as theories, algorithms and practical applications in computer-based methodology for the analysis of DNA and protein sequences. The course also covers theories for the analysis of RNAseq expression data and different analytical methods related to Next Generation Sequencing. Topics to be covered includes: biological databases, homology analyses, gene analyses (emphasis on software packages like e.g. EMBOSS and UGENE), web-based analytical tools, Unix OS, comparative genomics, functional genomics, GWAS analysis, molecular evolution, RNAseq expression analysis, annotation of new genomes. The course is based on lectures, exercises and project work. Apart from the written and the oral examination, compulsory components occur within e. g. exercises, project work and laboratory sessions. 2017-01-16 13:55:00 UTC 2017-03-21 13:55:00 UTC Swedish University of Agricultural Sciences Uppsala Biocenter, Uppsala, Sweden Uppsala Biocenter Uppsala Uppsala Sweden [] [] [] workshops_and_courses [] []
  • Introduction to Bioinformatics using NGS data, 2 hp

    23 - 27 January 2017

    Uppsala

    Elixir node event
    Introduction to Bioinformatics using NGS data, 2 hp https://tess.elixir-europe.org/events/introduction-to-bioinformatics-using-ngs-data-2-hp-3f1a2da9-beaf-4338-bd2c-492265472220 2017-01-23 09:00:00 UTC 2017-01-27 00:00:00 UTC Uppsala Uppsala [] [] [] workshops_and_courses [] []
  • Python Programming with Application to Bioinformatics, 2 hp

    6 - 10 February 2017

    Uppsala

    Elixir node event
    Python Programming with Application to Bioinformatics, 2 hp https://tess.elixir-europe.org/events/python-programming-with-application-to-bioinformatics-2-hp 2017-02-06 09:00:00 UTC 2017-02-10 00:00:00 UTC Uppsala Uppsala [] [] [] workshops_and_courses [] []
  • RNA-seq, 1 hp

    13 - 15 March 2017

    Uppsala

    Elixir node event
    RNA-seq, 1 hp https://tess.elixir-europe.org/events/rna-seq-1-hp 2017-03-13 09:00:00 UTC 2017-03-15 00:00:00 UTC Uppsala Uppsala [] [] [] workshops_and_courses [] []
  • R Programming Foundations for Life Scientists, 2 hp

    27 - 31 March 2017

    Uppsala

    Elixir node event
    R Programming Foundations for Life Scientists, 2 hp https://tess.elixir-europe.org/events/r-programming-foundations-for-life-scientists-2-hp-f3c02264-0573-45bf-9d3e-4067bfa91d1d 2017-03-27 09:00:00 UTC 2017-03-31 00:00:00 UTC Uppsala Uppsala [] [] [] workshops_and_courses [] []
  • Introduction to Genome Annotation, 1 hp

    9 - 11 May 2017

    Uppsala

    Elixir node event
    Introduction to Genome Annotation, 1 hp https://tess.elixir-europe.org/events/introduction-to-genome-annotation-1-hp Course content Genome annotation is the process in which loci of interest in a genome are identified, both in structure and function. The structural part includes identifying the number and size of exons and introns, size of UTRs, and number of isoforms. The functional annotation, in turn, focuses on inferring the biological role of different transcripts. The course is aimed at researchers that are involved in on-going or upcoming genome projects and wish to deepen their understanding of the various forms of data and computational steps required to achieve a comprehensive annotation. The focus of the course will be on non-model eukaryote organisms, and in particular the structural annotation of protein coding genes. We will use de novo gene finders, protein alignments and RNA-seq data to infer the structure of genes, and show how to combine these different lines of evidence to get the most stable and informative annotation. We will also infer the function of these genes using similarity to known proteins as well as the presence of functional domains. Topics covered will include: · Project planning · Gene finders · Protein alignment · RNA-seq assembly · Combined structural annotation using Maker2 · Functional annotation · Procaryote annotation · The NBIS annotation service 2017-05-09 09:00:00 UTC 2017-05-11 00:00:00 UTC Uppsala Uppsala [] jessica.lindvall@scilifelab.se [] [] workshops_and_courses [] []
  • UPPMAX Introductory Course Summer 2017

    21 - 24 August 2017

    Uppsala

    Elixir node event
    UPPMAX Introductory Course Summer 2017 https://tess.elixir-europe.org/events/uppmax-introductory-course-summer-2017 2017-08-21 09:00:00 UTC 2017-08-24 00:00:00 UTC Uppsala Uppsala [] [] [] workshops_and_courses [] []
  • Advanced Molecular Technology and Instrumentation for Proteome Analyses, 3 hp

    28 August - 8 September 2017

    Uppsala

    Elixir node event
    Advanced Molecular Technology and Instrumentation for Proteome Analyses, 3 hp https://tess.elixir-europe.org/events/advanced-molecular-technology-and-instrumentation-for-proteome-analyses-3-hp 2017-08-28 09:00:00 UTC 2017-09-08 00:00:00 UTC Uppsala Uppsala [] [] [] workshops_and_courses [] []
  • Cancelled: Perl Programming with Application to Bioinformatics, 2 hp

    11 - 15 September 2017

    Uppsala

    Elixir node event
    Cancelled: Perl Programming with Application to Bioinformatics, 2 hp https://tess.elixir-europe.org/events/perl-programming-with-application-to-bioinformatics-2-hp THE PERL COURSE IS CANCELLED DUE TO FEW APPLICANTS! Course content Perl is the ideal programming language for biological data analysis. The course is for students with little or no prior knowledge in perl. Familiarity in using a Unix command line (e.g. Mac OSX or Linux) is a requirement for the course. It is aimed at students who need computational skills to handle large datasets. The course will follow the book “Learning Perl”. It will consist of lectures to introduce all topics and computer assignments to be completed individually after each lecture. The course will also include practical computational exercises. To complete the course, students are expected to complete a short project, either from their own work or pre-defined. Topics covered will include: introduction to command line and writing perl scripts handling scalar data, control structures lists/arrays subroutines input/output regular expressions and pattern matching conditional operators strings and sorting loops hashes introduction to modules such as bioperl By the end of the course, students should: understand and be able to implement all fundamental elements of Perl programming be able to write programs to perform common bioinformatics tasks be able to understand and debug Perl programs be competent using a Unix environment Entry requirements To get the maximum benefit from the course we would like you to Be able to bring your own Mac or Linux laptop for the practical computational exercises. If you don’t have a Mac or Linux computer to bring please contact us at education@scilifelab.uu.se before you apply. Be familiar in using the Unix command line (Mac OSX or Linux). We will not teach Unix in detail in the course and you will have considerable trouble to follow the practical computational exercises if you are not reasonably used to work in a Unix. Other course are available at SciLifeLab that introduce the basics in Unix. It is strongly recommended that students read the course book “Learning Perl, 6th Edition” (Schwartz et al.) before attending the course. Selection criteria Selection criteria include correct entry requirements, motivation to attend the course as well as gender and geographical balance. Important dates Application open: May 8 https://secure.webforum.com/form/scilifelab/form.asp?sid=24839678 Application deadline: August 6 Confirmation to accepted students: August 14 Responsible teacher: Matthew Webster 2017-09-11 09:00:00 UTC 2017-09-15 00:00:00 UTC Uppsala Uppsala [] jessica.lindvall@scilifelab.se [] [] workshops_and_courses [] []
  • Workshop on quantitative automated analysis of microscopy data using CellProfiler

    15 September 2017

    Uppsala

    Elixir node event
    Workshop on quantitative automated analysis of microscopy data using CellProfiler https://tess.elixir-europe.org/events/workshop-on-quantitative-automated-analysis-of-microscopy-data-using-cellprofiler 2017-09-15 09:00:00 UTC 2017-09-15 15:00:00 UTC Uppsala Uppsala [] [] [] workshops_and_courses [] []
  • Single cell RNA sequencing data analysis, 1 hp

    2 - 4 October 2017

    Uppsala

    Elixir node event
    Single cell RNA sequencing data analysis, 1 hp https://tess.elixir-europe.org/events/single-cell-rna-sequencing-data-analysis-1-hp 2017-10-02 09:00:00 UTC 2017-10-04 00:00:00 UTC Uppsala Uppsala [] [] [] workshops_and_courses [] []
  • Python Programming with Application to Bioinformatics, 2 ECTS

    9 - 13 October 2017

    Uppsala

    Elixir node event
    Python Programming with Application to Bioinformatics, 2 ECTS https://tess.elixir-europe.org/events/python-programming-with-application-to-bioinformatics-2-ects 2017-10-09 09:00:00 UTC 2017-10-13 00:00:00 UTC Uppsala Uppsala [] [] [] workshops_and_courses [] []
  • R Programming Foundations for Life Scientists, 2 hp

    23 - 27 October 2017

    Uppsala

    Elixir node event
    R Programming Foundations for Life Scientists, 2 hp https://tess.elixir-europe.org/events/r-programming-foundations-for-life-scientists-2-hp-25fc97a4-bfc9-4a3a-8754-4a6bbc3acae7 2017-10-23 09:00:00 UTC 2017-10-27 00:00:00 UTC Uppsala Uppsala [] [] [] workshops_and_courses [] []
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