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60 events found

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  • NGS data analysis course, Pontificia Universidad Javeriana, Bogota, November 2015

    23 - 24 November 2015

    Bogota, Colombia

    Elixir node event
    NGS data analysis course, Pontificia Universidad Javeriana, Bogota, November 2015 https://tess.elixir-europe.org/events/ngs-data-analysis-course-pontificia-universidad-javeriana-bogota-november-2015 This course is organised for professionals in life sciences and biomedical sciences, preferably researchers or graduate students who are conducting or planning to conduct investigations that require the bioinformatic analysis of data from omics technologies of high throughput sequencing or next generation (NGS). 2015-11-23 16:15:00 UTC 2015-11-24 16:15:00 UTC Pontificia Universidad Javeriana, Bogota, Colombia Pontificia Universidad Javeriana Bogota Colombia [] Maria Bacadare Goitia [] [] [] [] []
  • Installing and configuring Linux Ubuntu for bioinformatics

    7 April 2016

    Canberra, Australia

    Installing and configuring Linux Ubuntu for bioinformatics https://tess.elixir-europe.org/events/installing-and-configuring-linux-ubuntu-for-bioinformatics CBBU, COMBINE, and SCU are organizing a series of introductory bioinformatics and statistics workshops. The workshops are primarily aimed at students, postdocs and early-mid career researchers, but are open to everybody from our College. 2016-04-07 09:00:00 UTC 2016-04-07 00:00:00 UTC Australian National University Canberra, Australia Canberra Australia Bioinformatics [] [] [] workshops_and_courses [] ABRBioinformatics
  • Software Carpentry Introduction to Programming with R and Use of Unix Shell and Git, plus Data Carpentry Processing and Visualization of Genomic Datasets

    11 - 13 April 2016

    Canberra, Australia

    Software Carpentry Introduction to Programming with R and Use of Unix Shell and Git, plus Data Carpentry Processing and Visualization of Genomic Datasets https://tess.elixir-europe.org/events/software-carpentry-introduction-to-programming-with-r-and-use-of-unix-shell-and-git-plus-data-carpentry-processing-and-visualization-of-genomic-datasets Workshops in bioinformatics and statistics CBBU, COMBINE, and SCU are organizing a series of introductory bioinformatics and statistics workshops. The workshops are primarily aimed at students, postdocs and early-mid career researchers, but are open to everybody from our College. 2016-04-11 09:00:00 UTC 2016-04-13 00:00:00 UTC Australian National University Canberra, Australia Canberra Australia Bioinformatics Data visualisation Data management [] [] [] workshops_and_courses [] ABRBioinformaticsSoftwareCarpentry
  • Experimental design and statistics

    17 May 2016

    Canberra, Australia

    Experimental design and statistics https://tess.elixir-europe.org/events/experimental-design-and-statistics This workshop will be run in the form of five 2-hour long sessions. There will be two sessions per week starting from mid-May. Preliminary dates are May 17th, 20th, 24th, 27th, and June 3rd. The times and venues are: Tue May 17 - 1 - 3pm, Slatyer Seminar Room Fri May 20 - 10am - 12pm, Gould Seminar Room Tue May 24 - 1 - 3pm, RN Robertson boardroom Fri May 27 - 10am - 12pm, Slatyer Seminar Room Fri Jun 3 - 10am - 12pm in STB-S1 at The Sciences Teaching Bldg. 2016-05-17 09:00:00 UTC 2016-05-17 00:00:00 UTC Australian National University Canberra, Australia Canberra Australia Data architecture, analysis and design Bioinformatics [] [] [] workshops_and_courses [] ABRBioinformatics
  • Software carpentry introduction to programming with Python and use of Unix Shell and Git

    30 May - 1 June 2016

    Canberra, Australia

    Software carpentry introduction to programming with Python and use of Unix Shell and Git https://tess.elixir-europe.org/events/software-carpentry-introduction-to-programming-with-python-and-use-of-unix-shell-and-git Workshops in bioinformatics and statistics CBBU, COMBINE, and SCU are organizing a series of introductory bioinformatics and statistics workshops. The workshops are primarily aimed at students, postdocs and early-mid career researchers, but are open to everybody from our College. This workshop is for novices and doesn't require any prior knowledge in Python, Git or Shell. The cost is $90 AUD to cover lunches and teas. It possible to pay with the GLC or bank transfer. Anybody interested please register no later than 22 May. 2016-05-30 09:00:00 UTC 2016-06-01 00:00:00 UTC Australian National University Canberra, Australia Canberra Australia Bioinformatics Data architecture, analysis and design [] [] [] workshops_and_courses [] ABRBioinformaticsSoftwareCarpentry
  • Detecting Mutations with Short-Read Sequencing

    15 July 2016

    Canberra, Australia

    Detecting Mutations with Short-Read Sequencing https://tess.elixir-europe.org/events/detecting-mutations-with-short-read-sequencing Reed A. Cartwright, Arizona State University Studying the process of de novo mutation from deep-sequencing of related samples is a difficult task. Because de novos are rare, artifacts generated by experimental and biological error tend to be more common than true positives. While de novos can be identified through validation, this is a slow process. In order to estimate mutation rates on large datasets in an automated way, we need to develop new probabilistic models that can handle sources of false positives. In this talk I will be discussing new computational methods to detect de novo mutations and their application to three different systems: human trios, ciliate mutation accumulation experiments, and yellow box eucalyptus. TIC Techniques In Computational Genomics A community of researchers engaged in, or dependent on, computational analysis of genomic data Weekly seminars by volunteers Drop-in sessions/round-table discussions convened by the Genome Discovery Unit (GDU) Venue alternates between JCSMR and RSB, ANU. To be added to TIC email list please contact marcin.adamski@anu.edu.au 2016-07-15 09:00:00 UTC 2016-07-15 00:00:00 UTC Australian National University Canberra, Australia Canberra Australia Computational biology Bioinformatics [] [] [] meetings_and_conferences [] BioinformaticsABR
  • Introduction to R and RStudio

    31 October 2016

    Canberra, Australia

    Introduction to R and RStudio https://tess.elixir-europe.org/events/introduction-to-r-and-rstudio Introduction to R and RStudio co-organized with Teresa Neeman from Australian National University Statistical Consulting Unit. The workshop will be over 2 half-days 31/10 and 1/11 9:30am - 1:30pm, and will cover basic concepts in R, including: introduction to R and RStudio, importing and graphing data, basic data processing, and statistics, good coding practice. The short course will help you to be more confident using R and will prepare you for understanding statistical modelling in R. This workshop is for R and RStudio novices. No previous experience in R or RStudio is expected. We especially invite mid-year honours students. Please note that this workshop was already advertised to honours students by Giel Van Dooren. To sign up please email no later than October 7th. The workshops are offered at no cost. 2016-10-31 09:00:00 UTC 2016-10-31 00:00:00 UTC Australian National University Canberra, Australia Canberra Australia Data visualisation Data management [] [] [] workshops_and_courses [] ABRBioinformatics
  • Data Processing in R for beginners

    8 November 2016

    Canberra, Australia

    Data Processing in R for beginners https://tess.elixir-europe.org/events/data-processing-in-r-for-beginners Data Processing in R for beginners co-organized with Janet Gardner from EEG. This will be a 6 hours workshop on 8/11 9:30 - 12:30 - lunch break - 1:00pm - 4:00pm and will be covering: Brief introduction to R and RStudio. Data types in R, and type conversions. Loading and saving tab and coma delimited files. Data exploration: basic statistic (mean, std. deviation and so on), basic plots (dotplots and histograms). Data sub-setting and filtering. Adding new columns with calculated values. Find-and-replace for values in a column. Detecting and handling errors an missing values in the data. Designing an appropriate structure for a spreadsheet. Joining datasets. Programming - creating functions in R. To sign up please email marcin.adamski@anu.edu.au no later than October 7th. The workshops are offered at no cost. 2016-11-08 09:00:00 UTC 2016-11-08 00:00:00 UTC Australian National University Canberra, Australia Canberra Australia Bioinformatics Data visualisation Data management [] [] [] workshops_and_courses [] ABRBioinformatics
  • Data Processing in R for advanced users

    15 November 2016

    Canberra, Australia

    Data Processing in R for advanced users https://tess.elixir-europe.org/events/data-processing-in-r-for-advanced-users Data Processing in R for advanced users co- organized with Janet Gardner from EEG. This will be a 6 hours workshop on 15/11 9:30 - 12:30 - lunch break - 1:00pm - 4:00pm covering the same subjects as workshop #2 but will be much more focused on writing code (programming in R) and practical exercises and will skip the basics. To sign up please email marcin.adamski@anu.edu.au no later than October 7th. The workshops are offered at no cost. 2016-11-15 09:00:00 UTC 2016-11-15 00:00:00 UTC Australian National University Canberra, Australia Canberra Australia Bioinformatics Data visualisation Data management [] [] [] workshops_and_courses [] ABRBioinformatics
  • MPI

    12 January - 12 April 2017

    Heverlee, Belgium

    Elixir node event
    MPI https://tess.elixir-europe.org/events/mpi The Message Passing Interface is the de facto standard for distributed programming in a scientific context. It is implemented in libraries that can be used from C/C++/Fortran, although wrappers for other languages exist as well. To write efficient code, a thorough understanding of the semantics of the API is required, this course will emphasize potential performance hazards and pitfalls. The strengths and weaknesses of various MPI features are discussed. In several hands-on sessions, the participant has the opportunity to experiment. Parallel architectures and programming models MPI overview MPI programming model Messages and point-to-point communication Non-blocking communication Derived data types Virtual topologies Collective communication MPI-2 overview MPI-2 one-sided communication Parallel debugging MPI-2 parallel file MPI-3 overview This MPI-course covers the full MPI-3 standard. Acknowledgement This course is based on a PATC course developed by dr. Rolf Rabenseifner (HLRS, Stuttgart) Detailed time/place info 01/12/2017 - 09.00 - 12.30 01/12/2017 - 13.30 - 17.0004/12/2017 - 09.00 - 12.30 04/12/2017 - 13.30 - 17.00 2017-01-12 09:00:00 UTC 2017-04-12 00:00:00 UTC ICTS opleidingscentrum B, Heverlee, Belgium ICTS opleidingscentrum B Heverlee Belgium 3001 [] [] [] [] [] []
  • HPC@KULeuven introduction

    24 February 2017

    Heverlee, Belgium

    Elixir node event
    HPC@KULeuven introduction https://tess.elixir-europe.org/events/hpc-kuleuven-introduction An introduction to the HPC infrastructure: What is a cluster? What HPC infrastructure is available at KU Leuven? Software environment. Accounts registrations and conditions of use. How to submit jobs. Hands-on. Detailed time/place info 24.02.2017, 09:00-17:00 2017-02-24 09:00:00 UTC 2017-02-24 00:00:00 UTC ICTS opleidingscentrum B, Heverlee, Belgium ICTS opleidingscentrum B Heverlee Belgium 3001 [] [] [] [] [] []
  • Linux scripting

    28 February 2017

    Heverlee, Belgium

    Elixir node event
    Linux scripting https://tess.elixir-europe.org/events/linux-scripting This course will give an introduction to Linux scripting and a short summary of possible Linux tools used in scripts: Linux scripting (Bash shell) Basic loops in Linux Useful commands: grep, cut Linux tools: awk, sed Using Linux scripting in writing PBS scripts for HPC This course provides several hands-on sessions Detailed time/place info 28.02.2017, 9:00-13:00 2017-02-28 09:00:00 UTC 2017-02-28 00:00:00 UTC ICTS opleidingscentrum B, Heverlee, Belgium ICTS opleidingscentrum B Heverlee Belgium 3001 [] [] [] [] [] []
  • C introduction

    13 - 21 March 2017

    Heverlee, Belgium

    Elixir node event
    C introduction https://tess.elixir-europe.org/events/c-introduction This course will provide the basics on the programming environment. Participants will be able to write small applications themselves as well as understand C programming code. Small examples and hands-on will be used to experiment with the different topics. C History Writing a small C progam, understand the development cycle Preprocessor Assignments, Keywords, Identifiers, Variables Operators Control flow Functions Arrays and structures Pointers Working with files and standard I/O Detailed time/place info 13.03.2017, 09:00-12:00 14.03.2017, 09:00-12:00 20.03.2017, 09:00-12:00 21.03.2017, 09:00-12:00 2017-03-13 09:00:00 UTC 2017-03-21 00:00:00 UTC ICTS opleidingscentrum B, Heverlee, Belgium ICTS opleidingscentrum B Heverlee Belgium 3001 [] [] [] [] [] []
  • High Performance Python

    20 March 2017

    Heverlee, Belgium

    Elixir node event
    High Performance Python https://tess.elixir-europe.org/events/high-performance-python Python is making inroads into the HPC landscape. However, writing Python code for efficient scientific computing is not entirely trivial. In this course a variety of techniques and libraries will be discussed that are useful in this context. Subjects covered include profiling of code to discover opportunities for optimization, using Cython, a Python extension that translate critical code sections into efficient C, wrapping C/C++/Fortran libraries in Python, multithreaded/multiprocess Python, distributed programming use mpi4py, and pySpark for data science. Detailed time/place info 20.03.2017, 13:00-17:00 2017-03-20 09:00:00 UTC 2017-03-20 00:00:00 UTC ICTS Opleidingscentrum room B, Heverlee, Belgium ICTS Opleidingscentrum room B Heverlee Belgium 3001 [] [] [] [] [] []
  • HPC Tips & Tricks: Code modernisation & optimization - Real world case studies and Intel and Allinea tools for finding performance bottleneck

    24 March 2017

    Heverlee, Belgium

    Elixir node event
    HPC Tips & Tricks: Code modernisation & optimization - Real world case studies and Intel and Allinea tools for finding performance bottleneck https://tess.elixir-europe.org/events/hpc-tips-tricks-code-modernisation-optimization-real-world-case-studies-and-intel-and-allinea-tools-for-finding-performance-bottleneck Code modernisation is about (re)writing code with the purpose of making optimal use of today’s (and tomorrow’s) computers. While a suboptimal computational performance of a code running on your desktop may be acceptable because it affects only you, codes running on HPC systems costing 1 M€ or more which use only a fraction of the machine capacity cannot be allowed. This Tips and Tricks session starts out with a short review of important aspects of computer architecture affecting performance and continues to show how to determine the performance of a code, by means of simple back-of-the envelope-calculations, as well as using sophisticated tools from the Intel Cluster Studio, such as Intel Advisor, Intel VTune and Allinea MAP. We demonstrate how to these tools can discover hot spots and their causes. We will examine some frequent causes of bad performance by studying two common scientific problems, the simulation of atomistic systems in a Monte Carlo setting, and in a Molecular Dynamics setting. Surprisingly, the most frequent cause of bad performance turns out to be the way how data are accessed, rather than algorithmic complexity or how many instructions your need to solve the problem. We will demonstrate how space filling curves like the Hilbert curve provide an efficient solution for fixing bad data access patterns in the simulation of atomistic systems (among other applications). This talk also touches upon arguments for choosing between (or combining) different programming languages (Fortran, C/C++, Python) for high performance computing. Detailed time/place info 24.03.2017, 09:00-13:00 2017-03-24 09:00:00 UTC 2017-03-24 00:00:00 UTC ICTS opleidingscentrum B, Heverlee, Belgium ICTS opleidingscentrum B Heverlee Belgium 3001 [] [] [] [] [] []
  • High performance Python

    18 April 2017

    Heverlee, Belgium

    Elixir node event
    High performance Python https://tess.elixir-europe.org/events/high-performance-python-df7e2fac-31d0-4515-a0e2-39a0f1606da1 Python is making inroads into the HPC landscape. However, writing Python code for efficient scientific computing is not entirely trivial. In this course a variety of techniques and libraries will be discussed that are useful in this context. Subjects covered include profiling of code to discover opportunities for optimization, using Cython, a Python extension that translate critical code sections into efficient C, wrapping C/C++/Fortran libraries in Python, multithreaded/multiprocess Python, distributed programming use mpi4py, and pySpark for data science. Detailed time/place info 18.04.2017, 13:30-17:30 2017-04-18 09:00:00 UTC 2017-04-18 00:00:00 UTC ICTS Opleidingscentrum room B, Heverlee, Belgium ICTS Opleidingscentrum room B Heverlee Belgium 3001 [] [] [] [] [] []
  • Linux introduction

    10 May 2017

    Heverlee, Belgium

    Elixir node event
    Linux introduction https://tess.elixir-europe.org/events/linux-introduction-4b7353c5-ec73-43b0-bd05-d9e2729e45e6 This course will give a short practical summary of the basic things one needs when using mainly the command line in Linux: Overview and distributions How to start working with Linux Short introduction to Graphical User Interface Command line basics: getting help, useful commands Linux File System: navigating, file paths, file manipulation, disk space, archiving Text editing- Groups, users, security: access rights Process control This course provides several hands-on sessions Detailed time/place info 05/10/2017 - 09.00 - 13.00 2017-05-10 09:00:00 UTC 2017-05-10 00:00:00 UTC ICTS opleidingscentrum B, Heverlee, Belgium ICTS opleidingscentrum B Heverlee Belgium 3001 [] [] [] [] [] []
  • Make - introduction

    12 May 2017

    Heverlee, Belgium

    Elixir node event
    Make - introduction https://tess.elixir-europe.org/events/make-introduction This course will give an introduction to creating/modifying Makefiles: Makefile introduction Basics of make operation Comments and line continuations Creating rules: dependencies and actions Using Macros Parameters and Conditional statements Useful compiler options Other possibilities of automation This course provides hands-on sessions Detailed time/place info 05/12/2017 - 09.00 - 13.00 2017-05-12 09:00:00 UTC 2017-05-12 00:00:00 UTC ICTS opleidingscentrum B, Heverlee, Belgium ICTS opleidingscentrum B Heverlee Belgium 3001 [] [] [] [] [] []
  • Linux tools

    11 July 2017

    Heverlee, Belgium

    Elixir node event
    Linux tools https://tess.elixir-europe.org/events/linux-tools This course will give an introduction to several useful Linux tools useful in academic research and everyday use of the system. Brief introduction to script files in Bash shell Using quotes Command line parameters i/o and pipes Useful commands: grep, cut, uniq, tr, sort, join Linux tools: awk, sed Using Linux scripting in writing PBS scripts for HPC This course provides hands-on sessions Detailed time/place info 07/11/2017 - 09.00 - 13.00 2017-07-11 09:00:00 UTC 2017-07-11 00:00:00 UTC ICTS opleidingscentrum B, Heverlee, Belgium ICTS opleidingscentrum B Heverlee Belgium 3001 [] [] [] [] [] []
  • GPU programming opportunities and challenges: a case study in finite element analysis

    5 August 2017

    Heverlee, Belgium

    Elixir node event
    GPU programming opportunities and challenges: a case study in finite element analysis https://tess.elixir-europe.org/events/gpu-programming-opportunities-and-challenges-a-case-study-in-finite-element-analysis GPUs have become an increasingly popular general computing platform. However, their efficient utilization requires some understanding of the architecture and programming model. A sensible question arises about their applicability in terms of the necessary time investment versus the added scientific value. An introduction on the basics of GPGPUs is presented first, including the architecture, the computing model and a general methodology for parallelizing an algorithm. Opportunities and pitfalls are then elucidated with basic examples of problems/implementations suited or unsuited for GPUs. Assessing a problem for its applicability to GPUs is shown as a key decision-making step. The seminar is not only envisioned as an introduction to GPU programming; key concepts are elucidated specifically on a concrete case of Finite Element (FE) algorithm parallelization. Concepts such as problem-breakdown, testing, verification, profiling and optimization are presented through the FE algorithm's implementation. Overall, a realistic assessment of adopting GPU computation (and everything it can entail) is provided through the lens of added scientific value. Detailed time/place info 08.05.2017, 10:00-12:00 2017-08-05 09:00:00 UTC 2017-08-05 00:00:00 UTC ICTS Opleidingscentrum room D, Heverlee, Belgium ICTS Opleidingscentrum room D Heverlee Belgium 3001 [] [] [] [] [] []
  • Version control

    11 August 2017

    Heverlee, Belgium

    Elixir node event
    Version control https://tess.elixir-europe.org/events/version-control-50be7a74-80bc-423b-b664-2050bc468e44 Did you ever wish you could have gone back to a previous version of the document you are editing?Did a co-worker accidentally overwrite your modifications to a file?Did you ever wonder when and why a change was made to a program? If at least one of the above applies, version control software is able to assist you in your work. In this information session we will provide an overview of how version control software can be used effectively by an individual, as well as by a group of collaborators.Version control software is not simply for programmers, it can help anyone who works on documents that change over time.Publications, course notes, bibliographies, even data come to mind. Although the emphasis is on the git version control system, subversion will be discussed as well. Detailed time/place info 08/11/2017 - 09.00 - 12.00 2017-08-11 09:00:00 UTC 2017-08-11 00:00:00 UTC ICTS opleidingscentrum B, Heverlee, Belgium ICTS opleidingscentrum B Heverlee Belgium 3001 [] [] [] [] [] []
  • Version control

    11 September 2017

    Heverlee, Belgium

    Elixir node event
    Version control https://tess.elixir-europe.org/events/version-control Did you ever wish you could have gone back to a previous version of the document you are editing?Did a co-worker accidentally overwrite your modifications to a file?Did you ever wonder when and why a change was made to a program? If at least one of the above applies, version control software is able to assist you in your work. In this information session we will provide an overview of how version control software can be used effectively by an individual, as well as by a group of collaborators.Version control software is not simply for programmers, it can help anyone who works on documents that change over time.Publications, course notes, bibliographies, even data come to mind. Although the emphasis is on the git version control system, subversion will be discussed as well. Detailed time/place info 09/11/2017 - 09.00 - 12.00 2017-09-11 09:00:00 UTC 2017-09-11 00:00:00 UTC ICTS opleidingscentrum B, Heverlee, Belgium ICTS opleidingscentrum B Heverlee Belgium 3001 [] [] [] [] [] []
  • Python for Data Processing

    5 - 6 October 2017

    Heverlee, Belgium

    Elixir node event
    Python for Data Processing https://tess.elixir-europe.org/events/python-for-data-processing 2017-10-05 09:30:00 UTC 2017-10-06 17:00:00 UTC VIB Bioinformatics Core ICTS Education Center KUL Leslokaal A, Heverlee, Belgium ICTS Education Center KUL Leslokaal A Heverlee Belgium 3001 [] [] [] [] [] []
  • HPC@KULeuven introduction

    10 October 2017

    Heverlee, Belgium

    Elixir node event
    HPC@KULeuven introduction https://tess.elixir-europe.org/events/hpc-kuleuven-introduction-45c3de3d-2d15-404d-8c46-f36054b431a1 An introduction to the HPC infrastructure: What is a cluster? What HPC infrastructure is available at KU Leuven? Software environment. Accounts registrations and conditions of use. How to submit jobs. Hands-on. Detailed time/place info 10/10/2017 - 09.00 - 13.00 2017-10-10 09:00:00 UTC 2017-10-10 00:00:00 UTC ICTS opleidingscentrum B, Heverlee, Belgium ICTS opleidingscentrum B Heverlee Belgium 3001 [] [] [] [] [] []
  • Matlab - Programming - introduction

    11 October 2017

    Heverlee, Belgium

    Elixir node event
    Matlab - Programming - introduction https://tess.elixir-europe.org/events/matlab-programming-introduction This 1 day course is building further on the introductory course (Matlab supercalculator) and covers more topics that are more oriented towards using Matlab as a programming environment: Basic Programming constructions in Matlab Debugging M-files: scripts and functions More on plotting in Matlab Improving Code Performance Create a GUI using MATLAB Guide After completion the student should be able to: Use the MATLAB environment in an efficient way Write programs in MATLAB to solve scientific problems Scripts, functions Use the available tools to improve the performance Visualize data in Matlab Detailed time/place info 10/11/2017 - 09.00 - 12.30 10/11/2017 - 13.30 - 17.00 2017-10-11 09:00:00 UTC 2017-10-11 00:00:00 UTC ICTS opleidingscentrum B, Heverlee, Belgium ICTS opleidingscentrum B Heverlee Belgium 3001 [] [] [] [] [] []
  • Matlab - Supercalculator - introduction

    13 October 2017

    Heverlee, Belgium

    Elixir node event
    Matlab - Supercalculator - introduction https://tess.elixir-europe.org/events/matlab-supercalculator-introduction This 1 day course provides a quick introduction to MATLAB. The purpose is to give students fluency in MATLAB: get to know the software environment, use it as a super scientific calculator and know the very basics of Matlab as a programming environment. Topics covered are: MATLAB as a calculator MATLAB Desktop and the MATLAB HELP Creating Arrays Array Operations Logical Operations Matlab Programming Environment MATLAB Editor M-files Basic Graphics: Plotting 2D/3D After completion the student should be able to: Use the MATLAB environment in an efficicient way Able to use Matlab for interactive computations use MATLAB functions/toolboxes Know where to find help in the MATLAB environment Understand the main features of the MATLAB development environment Write small scripts in MATLAB containing sequential statements. Detailed time/place info 13/10/2017 - 09.00 - 12.30 13/10/2017 - 13.30 - 17.00 2017-10-13 09:00:00 UTC 2017-10-13 00:00:00 UTC ICTS opleidingscentrum B, Heverlee, Belgium ICTS opleidingscentrum B Heverlee Belgium 3001 [] [] [] [] [] []
  • HPC-lunchbox: worker and atools

    16 October 2017

    Heverlee, Belgium

    Elixir node event
    HPC-lunchbox: worker and atools https://tess.elixir-europe.org/events/hpc-lunchbox-worker-and-atools In many scientific domains experiments are set up to explore parameter spaces. This type of workload can easily be parallelized since the individual computations are independent. However, a considerable amount of bookkeeping may be required to perform such experiments effectively.Two frameworks have been developed to make this type of task trivial.worker was developed in 2010, and has been improved over the years.atools is a recent development to accommodate use cases that worker is not optimal for.Both frameworks have a fairly large feature set, including monitoring of running jobs to keep track of the tasks that are completed/failed/pending, resuming interrupted tasks, merging output from the tasks, and so on.This lunchbox session will introduce you to these tools, and illustrate the more advanced features. You will also get tips on how to use the tools efficiently. Detailed time/place info 16/10/2017 - 12.00 - 14:00, sandwich at 12:00 and presentation 12:30-14:00 2017-10-16 09:00:00 UTC 2017-10-16 00:00:00 UTC ICTS opleidingscentrum B, Heverlee, Belgium ICTS opleidingscentrum B Heverlee Belgium 3001 [] [] [] [] [] []
  • Linux scripting

    24 October 2017

    Heverlee, Belgium

    Elixir node event
    Linux scripting https://tess.elixir-europe.org/events/linux-scripting-f8979664-f30a-4cb9-aad2-b919ee27b5a8 This course will give an introduction to Linux scripting with an introduction to the mostly used loops while programming How to create script files in Bash shell- Basic loops in Linux Return values Setting variables Using quotes Command line parameters Introduction to expressions Test conditions Shell logic structures (sequence, decision, loops) Shell functions i/o issues Using Linux scripting in writing PBS scripts for HPC This course provides hands-on sessions Detailed time/place info 24/10/2017 - 09.00 - 13.00 2017-10-24 09:00:00 UTC 2017-10-24 00:00:00 UTC ICTS opleidingscentrum B, Heverlee, Belgium ICTS opleidingscentrum B Heverlee Belgium 3001 [] [] [] [] [] []
  • HPC@KULeuven introduction

    14 November 2017

    Heverlee, Belgium

    Elixir node event
    HPC@KULeuven introduction https://tess.elixir-europe.org/events/hpc-kuleuven-introduction-611da864-05e2-4bfa-8caa-1430f39a8178 An introduction to the HPC infrastructure: What is a cluster? What HPC infrastructure is available at KU Leuven? Software environment. Accounts registrations and conditions of use. How to submit jobs. Hands-on. Detailed time/place info 14/11/2017 - 09.00 - 13.00 2017-11-14 09:00:00 UTC 2017-11-14 00:00:00 UTC ICTS opleidingscentrum B, Heverlee, Belgium ICTS opleidingscentrum B Heverlee Belgium 3001 [] [] [] [] [] []
  • Python as a second language I

    20 - 23 November 2017

    Heverlee, Belgium

    Elixir node event
    Python as a second language I https://tess.elixir-europe.org/events/python-as-a-second-language-i-2805fbde-4c78-4637-8fcb-d7d18a2fc952 This course starts with an introduction to the language, its simple datatypes and control structures, moving on to its more complex data structures, and classes. The emphasis is on how to use Python to solve real world problems in the domain of data transformation relevant to scientific computing.Hands-on sessions provide real world challenges with increasing levels of complexity. Detailed time/place info 20/11/2017 - 09.00 - 13.00 23/11/2017 - 09.00 - 13.00 2017-11-20 09:00:00 UTC 2017-11-23 00:00:00 UTC ICTS opleidingscentrum B, Heverlee, Belgium ICTS opleidingscentrum B Heverlee Belgium 3001 [] [] [] [] [] []
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