Organizer: INRA, URGI platform

Host institution: INRA

Start: Monday, 04 February 2019 @ 09:00

End: Wednesday, 06 February 2019 @ 17:00

Timezone: Central European Time Paris

Contact: urgi-contact@inra.fr

Venue: INRA, URGI, Bat 18 ­ Route de Saint­Cyr ­ RD10

City: Versailles

Country: France

Postcode: 78000

Scientific topic: Bioinformatics, Genomics

Target audience:
  • Bioinformatician, Bioanalysts
Description:

URGI organizes a BYOD-­style (Bring Your Own Data) training course on manual curation of transposable elements reference sequences obtained with REPET pipelines.

For pre-registration, please fill the form before December 26, 2018, we will answer you before January 3rd, 2019:
https://goo.gl/forms/ordIgogDuQffuQbZ2

Preliminary program
Day 1:
- Presentation of REPET outputs of TEdenovo and TEannot pipelines needed to curate the consensus library
- Presentation of tools used to assist curation/validation of TE consensus
- Presentation of use cases

Day 2 and 3
-Practice on your data or a set of precomputed data

Prerequesite
You have already launched TEdenovo and TEannot pipelines using REPET version 2.5
The MySQL database is still alive
OR
You have already participated to a TE annotation training (@URGI or in the frame of an Elixir Genome assembly and annotation Course)In this case we’ll provide you a precomputed dataset for the training

Fees : 150 € (Payment modalities will be sent once registration accepted)

Event type:
  • Workshops and courses

Capacity: 10

Eligibility:
  • Registration of interest

Keywords: Transposable elements, Manual curation, Genome sequence analysis

Manual curation of Transposable element annotation https://tess.elixir-europe.org/events/manual-curation-of-transposable-element-annotation URGI organizes a BYOD-­style (Bring Your Own Data) training course on manual curation of transposable elements reference sequences obtained with REPET pipelines. For pre-registration, please fill the form before December 26, 2018, we will answer you before January 3rd, 2019: https://goo.gl/forms/ordIgogDuQffuQbZ2 Preliminary program Day 1: - Presentation of REPET outputs of TEdenovo and TEannot pipelines needed to curate the consensus library - Presentation of tools used to assist curation/validation of TE consensus - Presentation of use cases Day 2 and 3 -Practice on your data or a set of precomputed data Prerequesite You have already launched TEdenovo and TEannot pipelines using REPET version 2.5 The MySQL database is still alive OR You have already participated to a TE annotation training (@URGI or in the frame of an Elixir Genome assembly and annotation Course)In this case we’ll provide you a precomputed dataset for the training Fees : 150 € (Payment modalities will be sent once registration accepted) 2019-02-04 09:00:00 UTC 2019-02-06 17:00:00 UTC INRA, URGI platform INRA, URGI, Bat 18 ­ Route de Saint­Cyr ­ RD10, Versailles, France INRA, URGI, Bat 18 ­ Route de Saint­Cyr ­ RD10 Versailles France 78000 Bioinformatics Genomics INRA urgi-contact@inra.fr [] Bioinformatician, Bioanalysts 10 workshops_and_courses registration_of_interest Transposable elementsManual curationGenome sequence analysis