Introduction to working with UNIX and bash (ONLINE LIVE TRAINING)
Organizer: University of Cambridge
Host institution: University of Cambridge Bioinformatics Training
Start: Monday, 05 July 2021 @ 08:30
End: Monday, 05 July 2021 @ 16:30
Venue: Craik-Marshall Building
Country: United Kingdom
Postcode: CB2 3ARTarget audience:
- Graduate students
- Postdocs and Staff members from the University of Cambridge
- Institutions and other external Institutions or individuals
PLEASE NOTE that until further notice, due to the evolving situation with Coronavirus no courses will be offered as classroom based at the Training Facility. The Bioinformatics Team will be teaching the course live online in conjunction with the presenters.
Using the Linux operating system and the bash command line interface, we will demonstrate the basic structure of the UNIX operating system and how we can interact with it using a basic set of commands. Applying this, we will learn how to navigate the filesystem, manipulate text-based data and structure simple pipelines out of these commands.
Building on the techniques learnt so far, we will then construct bash scripts combining the commands and structures already learnt into more complex, reusable tools. We will look at how we can apply these scripts to common problems faced in UNIX environments such as: communicating with remote servers; managing custom software installations and integrating these tools into our simple pipelines.
This course is targeted at participants with no prior experience working with UNIX-like systems (OSX, Linux) or command line interfaces.
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