Organizer: VIB Bioinformatics Core

Start: Monday, 20 January 2020 @ 09:00

End: Tuesday, 21 January 2020 @ 00:00

Venue: iGent

City: Gent

Country: Belgium

Postcode: 9052

Description:

Using a full publicly available chromosome read-set from one of the 1000 genome samples:

​Perform a complete analysis workflow including QC, read mapping, read coverage analysis, and variant calling against the human reference genome.
Use GenePattern and open source software to evaluate each step of a classical NGS variant workflow and feel the complexity of the task.
Quickly compare the obtained results with gold standard public data

The skills acquired during this session should allow participants understand what variant calling implies.

Participants with experience in command line can do the workflow using command line tools.

Hands-On introduction to NGS variant analysis https://tess.elixir-europe.org/events/hands-on-introduction-to-ngs-variant-analysis-9abd671c-4d42-4124-b084-9f2453cc9799 Using a full publicly available chromosome read-set from one of the 1000 genome samples: ​Perform a complete analysis workflow including QC, read mapping, read coverage analysis, and variant calling against the human reference genome. Use GenePattern and open source software to evaluate each step of a classical NGS variant workflow and feel the complexity of the task. Quickly compare the obtained results with gold standard public data The skills acquired during this session should allow participants understand what variant calling implies. Participants with experience in command line can do the workflow using command line tools. 2020-01-20 09:00:00 UTC 2020-01-21 00:00:00 UTC VIB Bioinformatics Core iGent, Gent, Belgium iGent Gent Belgium 9052 [] [] [] [] [] []