Organizer: University of Cambridge

Host institution: University of Cambridge Bioinformatics Training

Start: Monday, 01 June 2015 @ 08:30

End: Wednesday, 03 June 2015 @ 16:30

Venue: Craik-Marshall Building

City: Cambridge

Country: United Kingdom

Postcode: CB2 3AR

Target audience:
  • Graduate students
  • Postdocs and Staff members from the University of Cambridge
  • Institutions and other external Institutions or individuals
Description:

This course provides an introduction to the tools available through the Bioconductor project for manipulating and analysing high-throughput sequencing (HTS) data. We will present workflows for the analysis of ChIP-Seq and RNA-seq data starting from aligned reads in bam format. We will also describe the various resources available through Bioconductor to annotate and visualize HTS data, which can be applied to any type of sequencing experiment.

During this course you will learn about:
*Quality assessment of raw sequencing reads and aligned reads using R.
*Differential expression analysis using edgeR and DEseq.
*Annotating HTS results with Bioconductor.
*Importing ChIP-Seq peaks and performing downstream analysis.
*Integrating ChIP-Seq and RNA-Seq data.

The course timetable is available here.

Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by linking here.''

Event type:
  • Workshops and courses

Keywords: HDRUK

Analysis of High-throughput sequencing data with Bioconductor https://tess.elixir-europe.org/events/analysis-of-high-throughput-sequencing-data-with-bioconductor-a0722da2-553b-415c-ac8a-505af6cfaf65 This course provides an introduction to the tools available through the Bioconductor project for manipulating and analysing high-throughput sequencing (HTS) data. We will present workflows for the analysis of ChIP-Seq and RNA-seq data starting from aligned reads in bam format. We will also describe the various resources available through Bioconductor to annotate and visualize HTS data, which can be applied to any type of sequencing experiment. During this course you will learn about: *Quality assessment of raw sequencing reads and aligned reads using R. *Differential expression analysis using edgeR and DEseq. *Annotating HTS results with Bioconductor. *Importing ChIP-Seq peaks and performing downstream analysis. *Integrating ChIP-Seq and RNA-Seq data. The course timetable is available [here](https://drive.google.com/file/d/0B5BzNXp93Gp5c1U3NURheXlpbW8/view?usp=sharing). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Analysis%20of%20High-throughput%20sequencing%20data%20with%20Bioconductor_bioinfo-ngsbioc_2015.06.01-03_1392848&CourseName=Analysis%20of%20High-throughput%20sequencing%20data%20with%20Bioconductor&CourseDate=2015.06.01-03-05&CourseDuration=3&EventID=1392848).'' 2015-06-01 08:30:00 UTC 2015-06-03 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK