European Bioinformatics Institute (EBI)

EMBL-EBI provides freely available data from life science experiments, performs basic research in computational biology and offers an extensive user training programme, supporting researchers in academia and industry.

European Bioinformatics Institute (EBI) https://tess.elixir-europe.org/content_providers/european-bioinformatics-institute-ebi-c7ef3b49-7a29-42f0-910d-bc795f6b6496 EMBL-EBI provides freely available data from life science experiments, performs basic research in computational biology and offers an extensive user training programme, supporting researchers in academia and industry. /system/content_providers/images/000/000/062/original/Ebi_official_logo.png?1491474944
Showing 16 materials.
Extracting gene-disease evidence from literature, genetics, genomics and more

Do you want to identify and prioritise new therapeutic targets? Are you looking for associations of your gene of interest with a specific disease? Do you work in the area of drug repurposing? Are you interested in disease biology? If you said yes to any of these questions, this webinar is for...

Keywords: Europe PMC, Open Targets, gene-disease relationship, Text mining

Resource type: Webinar

Extracting gene-disease evidence from literature, genetics, genomics and more https://tess.elixir-europe.org/materials/extracting-gene-disease-evidence-from-literature-genetics-genomics-and-more Do you want to identify and prioritise new therapeutic targets? Are you looking for associations of your gene of interest with a specific disease? Do you work in the area of drug repurposing? Are you interested in disease biology? If you said yes to any of these questions, this webinar is for you. Watch to explore gene-disease relations using freely available tools from Europe PMC and Open Targets. Maria and Denise will show you how to access evidence from research literature, genetics, genomics and chemical data to obtain information at drug targets and disease levels. This webinar was recorded on 7th June 2018. It is best viewed in full screen mode using Google Chrome. The slides from this webinar can be downloaded below. Europe PMC, Open Targets, gene-disease relationship, Text mining Scientists
Preprint discovery 101: Tips & tricks for authors and readers

Preprints - research articles that are publicly posted before undergoing formal peer review - provide a rapid means to share research results. In this webinar, we will demonstrate how to follow hot-off-the-press research by incorporating preprints in your literature search routine using discovery...

Keywords: Europe PMC, Preprints

Resource type: Webinar

Preprint discovery 101: Tips & tricks for authors and readers https://tess.elixir-europe.org/materials/preprint-discovery-101-tips-tricks-for-authors-and-readers Preprints - research articles that are publicly posted before undergoing formal peer review - provide a rapid means to share research results. In this webinar, we will demonstrate how to follow hot-off-the-press research by incorporating preprints in your literature search routine using discovery tools developed by Europe PMC. We will also share some useful tips for those of you posting preprints, including how to claim a preprint to your ORCID or check if your preprint has been cited, reviewed or recommended by others. To learn more about using Europe PMC in your research try our Europe PMC: Quick tour or our webinar Effective Literature Research with Europe PMC. This webinar was recorded on 17 October 2018. It is best viewed in full-screen mode using Google Chrome. The slides from this webinar can be downloaded below. See the EMBL-EBI training pages for a list of upcoming webinars. This webinar is aimed at biological researchers who wish to learn more about incorporating pre-prints into their research. No prior knowledge is required. Europe PMC, Preprints
Navigating the data-rich literature: finding evidence in biomedical publications

In the age of data‐driven science, discovering all the data associated with a study can be tricky. In this webinar, we will demonstrate how to locate primary data in a publication, find facts and evidence to support your hypothesis, and scan a paper for important biological concepts using tools...

Keywords: Europe PMC, Biomedical Literature, Literature search

Resource type: Webinar

Navigating the data-rich literature: finding evidence in biomedical publications https://tess.elixir-europe.org/materials/navigating-the-data-rich-literature-finding-evidence-in-biomedical-publications In the age of data‐driven science, discovering all the data associated with a study can be tricky. In this webinar, we will demonstrate how to locate primary data in a publication, find facts and evidence to support your hypothesis, and scan a paper for important biological concepts using tools provided by Europe PMC. This webinar was recorded on 4th October 2017. It is best viewed in full-screen mode using Google Chrome. The slides from this webinar can be downloaded here. This webinar is aimed at scientists with an interest in learning more about the literature search tools provided by Europe PMC. No prior knowledge of bioinformatics is required, but an undergraduate-level understanding of biology would be useful. If you would like to learn more about Europe PMC have a look at our other webinar on Europe PMC: get the most from literature searches and our Europe PMC: Quick tour. See the EMBL-EBI training pages for a list of upcoming webinars. Europe PMC, Biomedical Literature, Literature search
Integrating publications into bioinformatics analysis

Overview Research literature contains a wealth of information that can be extracted at scale using text-mining technologies. To make text-mining data available to a wider group of researchers, the publications database, Europe PMC, provides access to millions of text-mined annotations, such as...

Keywords: Europe PMC, REST API, Bioinformatic analysis

Resource type: Webinar

Integrating publications into bioinformatics analysis https://tess.elixir-europe.org/materials/integrating-publications-into-bioinformatics-analysis Overview Research literature contains a wealth of information that can be extracted at scale using text-mining technologies. To make text-mining data available to a wider group of researchers, the publications database, Europe PMC, provides access to millions of text-mined annotations, such as genes and proteins, metabolites, species, mutations, phosphorylations, interactions, associations, and many more. This webinar will demonstrate how to access text-mined literature evidence programmatically, and how to supplement it with bibliographic information for advanced use cases. Two of such use cases, mapping of tropical disease research by author affiliation geoparsing and comparison of applicability of analytical chemistry techniques, will be introduced by invited speaker, Dr. Magnus Palmblad. This webinar was recorded on 2nd October 2019. It is best viewed in full-screen mode using Google Chrome. The slides from this webinar can be downloaded below. Audience This webinar is aimed at individuals who wish to learn about accessing text-mined literature evidence programmatically. No prior knowledge of bioinformatics is required, but undergraduate level knowledge of biology would be useful. See the EMBL-EBI training pages for a list of upcoming webinars. No prior knowledge of bioinformatics is required, but an undergraduate level knowledge of biology would be useful. Europe PMC, REST API, Bioinformatic analysis
Ontology Lookup Service (OLS)

This webinar will introduce the OLS system and show how it can be used to find ontologies and ontology terms. We will also cover how you can use OLS services to map existing data to ontologies.

Scientific topics: Ontology and terminology

Resource type: Webinar

Ontology Lookup Service (OLS) https://tess.elixir-europe.org/materials/ontology-lookup-service-ols This webinar will introduce the OLS system and show how it can be used to find ontologies and ontology terms. We will also cover how you can use OLS services to map existing data to ontologies. Ontology and terminology life scientists biocurators
Managing and making the most of your data

In this webinar Marta Teperek & Yasemin Türkyilmaz-van der Velden provide an overview of what data management is highlighting common misconceptions, pitfalls and best practice. They pose the questions 'Is there a reproducibility crisis in science'? and 'How much data would lose if your laptop...

Scientific topics: Data management

Resource type: Video

Managing and making the most of your data https://tess.elixir-europe.org/materials/managing-and-making-the-most-of-your-data In this webinar Marta Teperek & Yasemin Türkyilmaz-van der Velden provide an overview of what data management is highlighting common misconceptions, pitfalls and best practice. They pose the questions 'Is there a reproducibility crisis in science'? and 'How much data would lose if your laptop was stolen?'. This is followed up with an exploration of the selfish benefits of data management and a few hints, tips to get you started on your data management journey. Data management
Why share your data?

Presented in two parts, this webinar will explore the value of sharing your data from an institutional and researcher perspective. Our first speaker, Ewan Birney, is one of the directors of EMBL-EBI. He speaks about how the growth in data over the past decade has changed the way that we...

Scientific topics: Data management

Keywords: data sharing

Resource type: Video

Why share your data? https://tess.elixir-europe.org/materials/why-share-your-data Presented in two parts, this webinar will explore the value of sharing your data from an institutional and researcher perspective. Our first speaker, Ewan Birney, is one of the directors of EMBL-EBI. He speaks about how the growth in data over the past decade has changed the way that we approach biology and how EMBL-EBI provides some of the infrastructure to allow data sharing. He finishes up by highlighting the benefits of data sharing to the EMBL-EBI and shares his top four reasons for sharing data. Our second speaker, Elisabeth Busch, is the head of the Vertebrate Genetics and Genomics Group at the Wellcome Sanger Institute and the University of Cambridge. She tells us about her experiences in sharing her own research data, and the reasons that she felt compelled to share her data including the advantages for her own research. Elisabeth Busch Data management data sharing Life Science Researchers
Giving data context, structure and meaning

Metadata, standards and ontologies are common ways of providing data with context, structure and meaning. In this webinar Sira explores the idea of once data are ontologised (mapped to standard structured vocabulary), they become linkable to build a bigger infrastructure of knowledge network and...

Keywords: metadata, Ontologies

Giving data context, structure and meaning https://tess.elixir-europe.org/materials/giving-data-context-structure-and-meaning Metadata, standards and ontologies are common ways of providing data with context, structure and meaning. In this webinar Sira explores the idea of once data are ontologised (mapped to standard structured vocabulary), they become linkable to build a bigger infrastructure of knowledge network and provides a few scientific examples of how knowledge are drawn from linked data. She also provides a brief overview of tools that can be used to give data context, structure and meaning at different stages of the data lifecycle. metadata, Ontologies
Tools for data management planning

Having a data management plan is essential if we're to make the most of our own data and share it with others. Just like planning an experiment, we should plan what we are going to do with our data and how we are going to do it to ensure that we (and others) can use and re-use the data. If you...

Scientific topics: Data management

Keywords: Data managment plan

Resource type: Video

Tools for data management planning https://tess.elixir-europe.org/materials/tools-for-data-management-planning Having a data management plan is essential if we're to make the most of our own data and share it with others. Just like planning an experiment, we should plan what we are going to do with our data and how we are going to do it to ensure that we (and others) can use and re-use the data. If you have never made a data management plan before the process may initially seem daunting, but fortunately there are many tools out there to help you think through the what, where, how, why and when of data management. In this webinar Sarah Jones from the Digital Curation Centre and Rob Hooft from ELIXIR Netherlands show us two tools - DMP online and the ELIXIR Data Stewardship Wizard - and explain how they can help you apply data management and FAIR data practices in your own research. Data management Data managment plan Life Science Researchers
What happens to your data?

This webinar focuses on what happens to your data after you submit it to a public repository and addresses the question of data ownership. Keeva and Nancy introduce the concepts of FAIR data, metadata and standards. They then show you where you can find an appropriate place to share your data...

Scientific topics: Data management

Keywords: metadata, ArrayExpress

Resource type: Video

What happens to your data? https://tess.elixir-europe.org/materials/what-happens-to-your-data This webinar focuses on what happens to your data after you submit it to a public repository and addresses the question of data ownership. Keeva and Nancy introduce the concepts of FAIR data, metadata and standards. They then show you where you can find an appropriate place to share your data and give examples of how metadata and standards are used when you submit data to Metabolights and ArrayExpress. They also answer a few frequently asked data submission-related questions. Data management metadata, ArrayExpress Life Science Researchers
Europe PMC: get the most from literature searches

With Europe PMC, a free biomedical repository and partner in PubMed Central International, you can search worldwide, life-sciences literature, including articles, books, patents, and clinical guidelines. In this webinar, we will show how to use Europe PMC for effective literature research. We...

Keywords: Literature search, Life sciences publications, Europe PMC

Resource type: Webinar

Europe PMC: get the most from literature searches https://tess.elixir-europe.org/materials/europe-pmc-get-the-most-from-literature-searches With Europe PMC, a free biomedical repository and partner in PubMed Central International, you can search worldwide, life-sciences literature, including articles, books, patents, and clinical guidelines. In this webinar, we will show how to use Europe PMC for effective literature research. We will cover searches by topic and author, advanced search options for building complex queries, and setting alerts for your topic to stay on top of the published literature. Literature search, Life sciences publications, Europe PMC This webinar is aimed at scientists with an interest in learning more about the Europe PMC and optimising their literature searches.
Europe PMC, programmatically

Europe PMC is an open repository, providing access to worldwide biomedical literature, including articles, books, patents, and clinical guidelines. More than 32 million abstracts (27 million from PubMed) and 4 million full-text articles can be freely accessed through Europe PMC in a single...

Keywords: Literature search, Programmatic Access, Europe PMC, REST API, Biomedical Literature

Resource type: Webinar

Europe PMC, programmatically https://tess.elixir-europe.org/materials/europe-pmc-programmatically Europe PMC is an open repository, providing access to worldwide biomedical literature, including articles, books, patents, and clinical guidelines. More than 32 million abstracts (27 million from PubMed) and 4 million full-text articles can be freely accessed through Europe PMC in a single search. The mission of Europe PMC is to build open access, full-text scientific literature resources and deliver world-class literature services. This webinar will introduce the Europe PMC Articles RESTful API and show you how to access publications and related information, such as citations, data links, or text-mined terms, programmatically. Literature search, Programmatic Access, Europe PMC, REST API, Biomedical Literature
Extracting research evidence from publications

Bioinformaticians are routinely handling big data, including DNA, RNA, and protein sequence information. It’s time to treat biomedical literature as a dataset and extract valuable facts hidden in the millions of scientific papers. This webinar demonstrates how to access text-mined literature...

Keywords: Literature search, Biomedical Literature, Europe PMC, Text mining

Resource type: Webinar

Extracting research evidence from publications https://tess.elixir-europe.org/materials/extracting-research-evidence-from-publications Bioinformaticians are routinely handling big data, including DNA, RNA, and protein sequence information. It’s time to treat biomedical literature as a dataset and extract valuable facts hidden in the millions of scientific papers. This webinar demonstrates how to access text-mined literature evidence using Europe PMC Annotations API. We highlight several use cases, including linking diseases with potential treatment targets, or identifying which protein structures are cited along with a gene mutation. Literature search, Biomedical Literature, Europe PMC, Text mining Wet-lab researchers and bioinformaticians who want to access scientific literature and data programmatically.
Effective Literature Research with Europe PMC

Following the latest developments in your scientific field requires thorough and frequent literature research. In this webinar, we will show how to find and access relevant scientific literature using Europe PMC, an open biomedical literature database, part of PubMed Central International. We...

Keywords: Europe PMC, Biomedical Literature, Literature search

Resource type: Webinar

Effective Literature Research with Europe PMC https://tess.elixir-europe.org/materials/effective-literature-research-with-europe-pmc Following the latest developments in your scientific field requires thorough and frequent literature research. In this webinar, we will show how to find and access relevant scientific literature using Europe PMC, an open biomedical literature database, part of PubMed Central International. We will cover searches by topic and author, searches for associated research data, as well as advanced options for building complex queries. This webinar was recorded on 30 May 2018. It is best viewed in full-screen mode using Google Chrome. The slides from this webinar can be downloaded here. To learn more about searching grant information and on managing, exporting and saving searches you can watch our previous webinar Europe PMC: get the most from literature searches. You will find more information about Europe PMCs API service in our webinar Europe PMC, programmatically. You can also try our Europe PMC: Quick Tour. See the EMBL-EBI training pages for a list of upcoming webinars. This webinar is aimed at scientists who want to optimise their literature searches. No prior knowledge of bioinformatics is required, but an undergraduate-level understanding of biology would be useful. Europe PMC, Biomedical Literature, Literature search Scientists who want to optimise their literature searches
Europe PMC: Services for academic authors

Researchers are often asked to maintain an up-to-date publication list, whether for job applications, tenure evaluations, or grant proposals. An easy way to do this is by using your ORCID iD and linking it to your published papers. An ORCID is a unique identifier - personalised number that is...

Keywords: Europe PMC, ORCID, Biomedical Literature

Resource type: Webinar

Europe PMC: Services for academic authors https://tess.elixir-europe.org/materials/europe-pmc-services-for-academic-authors Researchers are often asked to maintain an up-to-date publication list, whether for job applications, tenure evaluations, or grant proposals. An easy way to do this is by using your ORCID iD and linking it to your published papers. An ORCID is a unique identifier - personalised number that is assigned to you when you register. By using your ORCID in addition to your name you can make sure that you are easily distinguishable from other researchers with the same name, keep track of your work through name changes, and even pull together different kinds of achievements, like grant awards, training, etc. This video shows how you can register for an ORCID, add your publications in three easy steps to build your digital CV, and how to get a personal author profile page that showcases your publications and citations. This webinar was recorded on 7th of August 2017. It is best viewed in full-screen mode using Google Chrome. No prior knowledge of bioinformatics is required, but an undergraduate-level understanding of biology would be useful. Europe PMC, ORCID, Biomedical Literature
How to Share Text Mining Results in Biology

Overview Though text mining becomes more widespread in biology, an average researcher can rarely use it to their advantage. In this webinar, Europe PMC presents a tool to easily share annotated biological entities and relations with the research community. Europe PMC Annotation Submission...

Keywords: Europe PMC, Text mining, Literature search

Resource type: Webinar

How to Share Text Mining Results in Biology https://tess.elixir-europe.org/materials/how-to-share-text-mining-results-in-biology Overview Though text mining becomes more widespread in biology, an average researcher can rarely use it to their advantage. In this webinar, Europe PMC presents a tool to easily share annotated biological entities and relations with the research community. Europe PMC Annotation Submission System allows text miners and curators in the field of life sciences to make their results available to the public. Annotated concepts can be browsed and searched for both on Europe PMC website as a part of SciLite tool and Advanced search, as well as via the Annotations API. This webinar was recorded on 9th of July 2019. It is best viewed in full-screen mode using Google Chrome. The slides from this webinar can be downloaded below. Audience This webinar is aimed at individuals who wish to learn more about sharing and reusing results of biomedical text-mining. No prior knowledge of bioinformatics is required, but an undergraduate level knowledge of biology would be useful. See the EMBL-EBI training pages for a list of upcoming webinars. No prior knowledge of bioinformatics is required, but an undergraduate-level understanding of biology would be useful. Europe PMC, Text mining, Literature search
Showing 30 upcoming events out of 33. Found 1227 past events. View all results.
  • PDBe Graph Database: A Neo4J-driven integrative knowledge graph for structural data

    27 May 2020

    Elixir node event
    PDBe Graph Database: A Neo4J-driven integrative knowledge graph for structural data https://tess.elixir-europe.org/events/pdbe-graph-database-a-neo4j-driven-integrative-knowledge-graph-for-structural-data This webinar will introduce the concepts of a graph database and describe how we used a graph-approach for integrating the structural data of the Protein Data Bank. 2020-05-27 15:30:00 UTC 2020-05-27 15:30:00 UTC [] Ajay Mishra [] [] [] [] HDRUK
  • CABANA: Genomic data for surveillance of communicable disease (Cancelled)

    7 - 11 December 2020

    Cambridge, United Kingdom

    Elixir node event
    CABANA: Genomic data for surveillance of communicable disease (Cancelled) https://tess.elixir-europe.org/events/cabana-genomic-data-for-surveillance-of-communicable-disease-cancelled This course has been cancelled. We apologise for any inconvenience caused. This course will develop skills in the analysis of field-collected microbial genomes samples and how to use data this genomic in the surveillance of communicable diseases. 2020-12-07 09:00:00 UTC 2020-12-11 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Marina Pujol [] [] [] [] HDRUK
  • Cancer Genomics

    29 June - 3 July 2020

    Cambridge, United Kingdom

    Elixir node event
    Cancer Genomics https://tess.elixir-europe.org/events/cancer-genomics-2787b481-b1cb-4721-971a-d68ec96d1cba This course will focus on the analysis of data from genomic studies of Cancer. Lectures will give an insight into the bioinformatic concepts required to analyse such data, whilst practical sessions will enable the participants to apply statistical methods to the analysis of cancer genomics data under the guidance of the lecturers and teaching assistants. 2020-06-29 09:00:00 UTC 2020-07-03 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Rebecca Nicholl [] [] [] [] HDRUK
  • BioExcel Summer School on Biomolecular Simulations 2020

    22 - 26 June 2020

    Elixir node event
    BioExcel Summer School on Biomolecular Simulations 2020 https://tess.elixir-europe.org/events/bioexcel-summer-school-on-biomolecular-simulations-2020 This course will provide participants who are using or planning to use biomolecular modeling and simulation in their everyday research with training in BioExcel flagship software 2020-06-22 12:00:00 UTC 2020-06-26 12:00:00 UTC [] Michelle Mendonca [] [] [] [] HDRUK
  • EBI - Joint EBI-Wellcome Trust Proteomics Bioinformatics workshop

    No date given

    Elixir node event
    EBI - Joint EBI-Wellcome Trust Proteomics Bioinformatics workshop https://tess.elixir-europe.org/events/ebi-joint-ebi-wellcome-trust-proteomics-bioinformatics-workshop Yvonne Hitching Yvonne Hitching [] Yvonne Hitching [] [] [] [] HDRUK
  • FEBS: In Silico Systems Biology: Network Reconstruction, Analysis and Network-based Modelling

    No date given

    Elixir node event
    FEBS: In Silico Systems Biology: Network Reconstruction, Analysis and Network-based Modelling https://tess.elixir-europe.org/events/febs-in-silico-systems-biology-network-reconstruction-analysis-and-network-based-modelling Alison Barker Alison Barker [] Alison Barker [] [] [] [] HDRUK
  • Using the Ensembl Genome Browser

    No date given

    Elixir node event
    Using the Ensembl Genome Browser https://tess.elixir-europe.org/events/using-the-ensembl-genome-browser-76bbe497-3738-4bde-b9cc-0e70d85e67eb Using the Ensembl Genome Browser Using the Ensembl Genome Browser [] [] [] [] [] HDRUK
  • Single cell RNA-seq analysis using R

    5 - 9 October 2020

    Cambridge, United Kingdom

    Elixir node event
    Single cell RNA-seq analysis using R https://tess.elixir-europe.org/events/single-cell-rna-seq-analysis-using-r This course covers the analysis of scRNA-seq data using R and command line tools. 2020-10-05 09:45:00 UTC 2020-10-09 14:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Meredith Willmott [] [] [] [] HDRUK
  • Exploring biological sequences

    14 - 16 October 2020

    Cambridge, United Kingdom

    Elixir node event
    Exploring biological sequences https://tess.elixir-europe.org/events/exploring-biological-sequences-29445985-7c94-447f-b262-fc5d6208cfd0 We are currently developing the course programme for 2020, and as further information about the course becomes available we will update this page. 2020-10-14 09:00:00 UTC 2020-10-16 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Charlotte Pearton [] [] [] [] HDRUK
  • Single-Cell RNA-Sequence Analysis

    5 - 8 October 2020

    Cambridge, United Kingdom

    Elixir node event
    Single-Cell RNA-Sequence Analysis https://tess.elixir-europe.org/events/single-cell-rna-sequence-analysis We are currently developing the course programme for 2020, and as further information about the course becomes available we will update this page. 2020-10-05 09:00:00 UTC 2020-10-08 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Meredith Willmott [] [] [] [] HDRUK
  • Bioinformatics for Principal Investigators

    17 - 19 June 2020

    Cambridge, United Kingdom

    Elixir node event
    Bioinformatics for Principal Investigators https://tess.elixir-europe.org/events/bioinformatics-for-principal-investigators-941ecaa1-1e36-4f45-b138-c9a40cd09bfa The aim of this course is to provide principal investigators with an introduction to the challenges of working with biological data as a research leader. This course will not provide a platform for teaching hands-on bioinformatics analysis. 2020-06-17 09:00:00 UTC 2020-06-19 13:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Marina Pujol [] [] [] [] HDRUK
  • Summer School in bioinformatics

    12 - 16 October 2020

    Cambridge, United Kingdom

    Elixir node event
    Summer School in bioinformatics https://tess.elixir-europe.org/events/summer-school-in-bioinformatics-77f7f58f-cee6-430c-b176-c28939aac928 Please note this course has moved from the previous dates of 22-26 June 2020. This course provides an introduction to the use of bioinformatics in biological research, giving participants guidance for using bioinformatics in their work whilst also providing hands-on training in tools and resources appropriate to their research. 2020-10-12 10:00:00 UTC 2020-10-16 15:30:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Scientific Conferences [] [] [] [] HDRUK
  • Proteomics Bioinformatics

    26 - 31 July 2020

    Cambridge, United Kingdom

    Elixir node event
    Proteomics Bioinformatics https://tess.elixir-europe.org/events/proteomics-bioinformatics-9b73f6df-951a-4be8-98df-a6d73fcb5f07 This course provides hands-on training in the basics of mass spectrometry and proteomics bioinformatics. 2020-07-26 09:00:00 UTC 2020-07-31 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Advanced Courses [] [] [] [] HDRUK
  • Metagenomics bioinformatics

    2 - 6 November 2020

    Cambridge, United Kingdom

    Elixir node event
    Metagenomics bioinformatics https://tess.elixir-europe.org/events/metagenomics-bioinformatics-91c48308-c2e6-48eb-b1ea-113f79da1edd This course will cover the use of publicly available resources to manage, share, analyse and interpret metagenomics data, including marker gene, whole gene shotgun (WGS) and assembly-based approaches. 2020-11-02 09:00:00 UTC 2020-11-06 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Marina Pujol [] [] [] [] HDRUK
  • CABANA: Genomic Data for Surveillance of Communicable Disease

    7 - 11 December 2020

    Cambridge, United Kingdom

    Elixir node event
    CABANA: Genomic Data for Surveillance of Communicable Disease https://tess.elixir-europe.org/events/cabana-genomic-data-for-surveillance-of-communicable-disease This course will develop skills in the analysis of field-collected microbial genomes samples and how to use data this genomic in the surveillance of communicable diseases. 2020-12-07 09:00:00 UTC 2020-12-11 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Marina Pujol [] [] [] [] HDRUK
  • Structural bioinformatics

    23 - 27 November 2020

    Cambridge, United Kingdom

    Elixir node event
    Structural bioinformatics https://tess.elixir-europe.org/events/structural-bioinformatics-de38d612-6cf9-481f-9a57-3a54511976de This course explores bioinformatics data resources and tools for the interpretation and exploitation of bio-macromolecular structures. 2020-11-23 09:00:00 UTC 2020-11-27 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Meredith Willmott [] [] [] [] HDRUK
  • Bioinformatics & Functional Genomics in Zebrafish

    2 - 5 November 2020

    Cambridge, United Kingdom

    Elixir node event
    Bioinformatics & Functional Genomics in Zebrafish https://tess.elixir-europe.org/events/bioinformatics-functional-genomics-in-zebrafish-ff8f3fea-a89e-4b25-93b1-111191cae4b7 This course has been designed specifically for researchers working within the Zebrafish community, providing an introduction and practical knowledge of tools and resources for working with functional genomics data. 2020-11-02 09:00:00 UTC 2020-11-05 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Meredith Willmott [] [] [] [] HDRUK
  • CABANA: Bioinformatics for plant biology

    30 November - 4 December 2020

    San Jose, Costa Rica

    Elixir node event
    CABANA: Bioinformatics for plant biology https://tess.elixir-europe.org/events/cabana-bioinformatics-for-plant-biology Please note this course will now be held in Costa Rica. It was previously due to run at EMBL-EBI in the UK. 2020-11-30 09:00:00 UTC 2020-12-04 17:00:00 UTC University of Costa Rica (UCR), San Jose, Costa Rica University of Costa Rica (UCR) San Jose Costa Rica CB10 1SD [] Marina Pujol [] [] [] [] HDRUK
  • Managing a Bioinformatics Core Facility

    17 - 19 June 2020

    Cambridge, United Kingdom

    Elixir node event
    Managing a Bioinformatics Core Facility https://tess.elixir-europe.org/events/managing-a-bioinformatics-core-facility-29661ccd-c017-4f20-8a90-165dfa72ad60 Bioinformatics core facilities play an essential role in enabling research in the molecular life sciences. This is constantly evolving as new research tools emerge, as experiments become increasingly data intensive, and as their clients – experimental researchers – become more exposed to the power of data-driven biology. 2020-06-17 09:00:00 UTC 2020-06-19 13:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Marina Pujol [] [] [] [] HDRUK
  • Systems Biology: From Large Datasets to Biological Insight

    6 - 10 July 2020

    Cambridge, United Kingdom

    Elixir node event
    Systems Biology: From Large Datasets to Biological Insight https://tess.elixir-europe.org/events/systems-biology-from-large-datasets-to-biological-insight-7d62660b-3786-4a60-a850-004aace58aaf Run jointly with the Wellcome Genome Campus, Connecting Science, this course will provide participants with an introduction to network analysis and an in-depth training in the main modelling approaches used in systems biology. 2020-07-06 09:00:00 UTC 2020-07-10 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Advanced Courses [] [] [] [] HDRUK
  • Next Generation Sequencing Bioinformatics

    7 - 11 December 2020

    Cambridge, United Kingdom

    Elixir node event
    Next Generation Sequencing Bioinformatics https://tess.elixir-europe.org/events/next-generation-sequencing-bioinformatics-8bb1d757-0644-44ce-b8f0-29dafc320ce2 This course will provide an introduction to the technology, analysis workflows, tools and resources for next generation sequencing data analysis. 2020-12-07 09:00:00 UTC 2020-12-11 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Meredith Willmott [] [] [] [] HDRUK
  • Protein Function Prediction with Machine Learning and Interactive Analytics

    3 - 4 June 2020

    Cambridge, United Kingdom

    Elixir node event
    Protein Function Prediction with Machine Learning and Interactive Analytics https://tess.elixir-europe.org/events/protein-function-prediction-with-machine-learning-and-interactive-analytics-cfca40cd-e960-416b-a96a-6a04d7e52bba This workshop explores how to conduct functional annotation of proteins through machine learning (ML) approaches. 2020-06-03 09:00:00 UTC 2020-06-04 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Meredith Willmott [] [] [] [] HDRUK
  • Data Collection, Analysis and Interpretation for Genomic Medicine (Virtual)

    23 - 25 June 2020

    Copenhagen, Denmark

    Elixir node event
    Data Collection, Analysis and Interpretation for Genomic Medicine (Virtual) https://tess.elixir-europe.org/events/data-collection-analysis-and-interpretation-for-genomic-medicine-virtual The delivery of this course has changed from face-to-face to virtual. This workshop will introduce cloud technologies for creating bioinformatics pipelines relevant to clinical decision making in genomic medicine. 2020-06-23 09:00:00 UTC 2020-06-25 13:00:00 UTC Mærsk Tower, University of Copenhagen, Copenhagen, Copenhagen, Denmark Mærsk Tower, University of Copenhagen, Copenhagen Copenhagen Denmark DK2200 [] Ajay Mishra [] [] [] [] HDRUK
  • Mathematics of life: Modelling molecular mechanisms

    28 September - 2 October 2020

    Cambridge, United Kingdom

    Elixir node event
    Mathematics of life: Modelling molecular mechanisms https://tess.elixir-europe.org/events/mathematics-of-life-modelling-molecular-mechanisms This course will provide participants with an introduction to network analysis as well as modelling resources, tools and approaches used in systems biology. 2020-09-28 10:45:00 UTC 2020-10-02 10:45:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Rebecca Nicholl [] [] [] [] HDRUK
  • Data Collection, Analysis and Interpretation for Genomic Medicine

    23 - 25 June 2020

    Copenhagen, Denmark

    Elixir node event
    Data Collection, Analysis and Interpretation for Genomic Medicine https://tess.elixir-europe.org/events/data-collection-analysis-and-interpretation-for-genomic-medicine This workshop will introduce cloud technologies for creating bioinformatics pipelines relevant to clinical decision making in genomic medicine. 2020-06-23 09:00:00 UTC 2020-06-25 13:00:00 UTC Mærsk Tower, University of Copenhagen, Copenhagen, Copenhagen, Denmark Mærsk Tower, University of Copenhagen, Copenhagen Copenhagen Denmark DK2200 [] Ajay Mishra [] [] [] [] HDRUK
  • Proteomics bioinformatics (Cancelled)

    26 - 31 July 2020

    Cambridge, United Kingdom

    Elixir node event
    Proteomics bioinformatics (Cancelled) https://tess.elixir-europe.org/events/proteomics-bioinformatics-cancelled EMBL-EBI has taken the difficult decision to pause our programme of external courses and conferences. As a result, we are cancelling this course and apologise for the inconvenience. 2020-07-26 09:00:00 UTC 2020-07-31 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Advanced Courses [] [] [] [] HDRUK
  • Systems biology: From large datasets to biological insight (Cancelled)

    6 - 10 July 2020

    Cambridge, United Kingdom

    Elixir node event
    Systems biology: From large datasets to biological insight (Cancelled) https://tess.elixir-europe.org/events/systems-biology-from-large-datasets-to-biological-insight-cancelled EMBL-EBI has taken the difficult decision to pause our programme of external courses and conferences. As a result, we are cancelling this course and apologise for the inconvenience. 2020-07-06 09:00:00 UTC 2020-07-10 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Advanced Courses [] [] [] [] HDRUK
  • Starting single cell RNA-seq analysis (Virtual)

    1 - 5 June 2020

    Cambridge, United Kingdom

    Elixir node event
    Starting single cell RNA-seq analysis (Virtual) https://tess.elixir-europe.org/events/starting-single-cell-rna-seq-analysis-virtual The delivery of this course has changed from face-to-face to virtual. This course trains participants to analyse single cell RNA-seq data utilising Galaxy pipelines, an online open-access resource for the computer-phobic. 2020-06-01 10:15:00 UTC 2020-06-05 13:30:00 UTC European Bioinformatics Institute (EMBL-EBI) - Training Room 1, Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) - Training Room 1 Cambridge United Kingdom CB10 1SD [] Meredith Willmott [] [] [] [] HDRUK
  • Cancer genomics (Cancelled)

    29 June - 3 July 2020

    Cambridge, United Kingdom

    Elixir node event
    Cancer genomics (Cancelled) https://tess.elixir-europe.org/events/cancer-genomics-cancelled EMBL-EBI has taken the difficult decision to pause our programme of external courses and conferences. As a result, we are cancelling this course and apologise for the inconvenience. 2020-06-29 09:00:00 UTC 2020-07-03 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Rebecca Nicholl [] [] [] [] HDRUK
  • Bioinformatics for principal investigators (Cancelled)

    17 - 19 June 2020

    Cambridge, United Kingdom

    Elixir node event
    Bioinformatics for principal investigators (Cancelled) https://tess.elixir-europe.org/events/bioinformatics-for-principal-investigators-cancelled EMBL-EBI has taken the difficult decision to pause our programme of external courses and conferences. As a result, we are cancelling this course and apologise for the inconvenience. 2020-06-17 09:00:00 UTC 2020-06-19 13:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Marina Pujol [] [] [] [] HDRUK
  • Managing a bioinformatics core facility (Virtual)

    17 - 19 June 2020

    Cambridge, United Kingdom

    Elixir node event
    Managing a bioinformatics core facility (Virtual) https://tess.elixir-europe.org/events/managing-a-bioinformatics-core-facility-virtual The delivery of this course has changed from face-to-face to virtual. Bioinformatics core facilities play an essential role in enabling research in the molecular life sciences. This is constantly evolving as new research tools emerge, as experiments become increasingly data intensive, and as their clients – experimental researchers – become more exposed to the power of data-driven biology. 2020-06-17 09:00:00 UTC 2020-06-19 13:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Marina Pujol [] [] [] [] HDRUK
  • Protein function prediction with machine learning and interactive analytics (Cancelled)

    3 - 4 June 2020

    Cambridge, United Kingdom

    Elixir node event
    Protein function prediction with machine learning and interactive analytics (Cancelled) https://tess.elixir-europe.org/events/protein-function-prediction-with-machine-learning-and-interactive-analytics-cancelled EMBL-EBI has taken the difficult decision to pause our programme of external courses and conferences. As a result, we are cancelling this course and apologise for the inconvenience. 2020-06-03 09:00:00 UTC 2020-06-04 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Meredith Willmott [] [] [] [] HDRUK
  • Exploring metabolite metabolism using the Enzyme Portal

    10 June 2020

    Elixir node event
    Exploring metabolite metabolism using the Enzyme Portal https://tess.elixir-europe.org/events/exploring-metabolite-metabolism-using-the-enzyme-portal This webinar will provide a practical overview of how to use the Enzyme Portal to find enzyme-related information about metabolites. 2020-06-10 15:30:00 UTC 2020-06-10 16:30:00 UTC [] Anna Swan [] [] [] [] HDRUK